PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Csinscaffold000900133010.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000920134040.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold001030138930.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold001050140250.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold001130142810.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold001200144980.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold001230146390.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold001710158630.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold001780160080.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold001830161020.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold001860161600.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold002210167940.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold002520172780.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold002880178800.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold004130193430.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold004150193860.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold004170193920.2 Steroid DWF4/CYP90B1 low borderline
Csinscaffold006300206500.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold006300206500.2 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold006300206500.3 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold006300206500.4 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold006370206770.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold006370206800.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold006470207250.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold007960211860.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold010670217200.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold011900218950.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold012430219440.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold013690220800.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold013910221070.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold014590221730.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold015340222370.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold019480225360.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold021220226530.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold021220226540.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold031590231440.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold033190232100.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold040770234790.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold063940240810.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold064760240980.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold080230244550.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold090400246850.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold118350252480.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold119870252800.1 Steroid DWF4/CYP90B1 low borderline