PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Csinscaffold001680157910.1 Flavonoid F3H medium borderline
Csinscaffold001680157920.1 Flavonoid F3H medium borderline
Csinscaffold001680157930.1 Flavonoid F3H medium borderline
Csinscaffold001790160230.1 Flavonoid F3H low borderline
Csinscaffold001790160240.1 Flavonoid F3H medium borderline
Csinscaffold001790160250.1 Flavonoid F3H medium borderline
Csinscaffold002170167240.1 Flavonoid F3H medium borderline
Csinscaffold002170167240.2 Flavonoid F3H medium borderline
Csinscaffold003050180780.1 Flavonoid F3H medium borderline
Csinscaffold003250183190.1 Flavonoid F3H low borderline
Csinscaffold003250183200.1 Flavonoid F3H low borderline
Csinscaffold003430185660.1 Flavonoid F3H medium borderline
Csinscaffold003450185890.1 Flavonoid F3H medium borderline
Csinscaffold003560187490.1 Flavonoid F3H medium borderline
Csinscaffold003700189380.1 Flavonoid F3H medium borderline
Csinscaffold004390195740.1 Flavonoid F3H medium borderline
Csinscaffold004390195770.1 Flavonoid F3H medium borderline
Csinscaffold004390195780.1 Flavonoid F3H medium borderline
Csinscaffold004390195780.2 Flavonoid F3H medium borderline
Csinscaffold004390195780.3 Flavonoid F3H medium borderline
Csinscaffold004390195780.4 Flavonoid F3H medium borderline
Csinscaffold004390195790.1 Flavonoid F3H medium borderline
Csinscaffold004390195800.1 Flavonoid F3H medium borderline
Csinscaffold004920199050.1 Flavonoid F3H medium borderline
Csinscaffold004920199100.1 Flavonoid F3H medium borderline
Csinscaffold005120200520.1 Flavonoid F3H medium borderline
Csinscaffold006720208180.1 Flavonoid F3H medium borderline
Csinscaffold006720208190.1 Flavonoid F3H low borderline
Csinscaffold007390210300.1 Flavonoid F3H medium pass
Csinscaffold007390210330.1 Flavonoid F3H medium borderline
Csinscaffold007390210340.1 Flavonoid F3H medium borderline
Csinscaffold009970215860.1 Flavonoid F3H medium borderline
Csinscaffold016160222940.1 Flavonoid F3H medium borderline
Csinscaffold016160222950.1 Flavonoid F3H medium borderline
Csinscaffold017650223970.1 Flavonoid F3H medium borderline
Csinscaffold018420224580.1 Flavonoid F3H medium borderline
Csinscaffold020390226090.1 Flavonoid F3H medium borderline
Csinscaffold020390226100.1 Flavonoid F3H medium borderline
Csinscaffold026020229030.1 Flavonoid F3H medium pass
Csinscaffold042490235220.1 Flavonoid F3H medium borderline
Csinscaffold044840235980.1 Flavonoid F3H medium borderline
Csinscaffold050800237610.1 Flavonoid F3H medium pass
Csinscaffold051140237700.1 Flavonoid F3H medium borderline
Csinscaffold058050239390.1 Flavonoid F3H medium borderline
Csinscaffold069470242120.1 Flavonoid F3H medium borderline
Csinscaffold070060242260.1 Flavonoid F3H medium borderline
Csinscaffold082380244950.1 Flavonoid F3H medium borderline
Csinscaffold099330248670.1 Flavonoid F3H medium borderline