PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
Csinscaffold000020009570.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000020011220.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000040024410.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000090044110.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000130057250.1 Alkaloid G8O/G8H low borderline
Csinscaffold000150061110.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000200073270.1 Alkaloid G8O/G8H low borderline
Csinscaffold000320092880.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000330094440.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000400100260.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000430103400.1 Alkaloid G8O/G8H low borderline
Csinscaffold000480106920.1 Alkaloid G8O/G8H medium pass
Csinscaffold000630119100.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000630119390.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000630119400.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000630119410.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000770126970.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000910133750.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000920134050.1 Alkaloid G8O/G8H low borderline
Csinscaffold000930134550.1 Alkaloid G8O/G8H low borderline
Csinscaffold001220146100.1 Alkaloid G8O/G8H medium borderline
Csinscaffold001340149510.1 Alkaloid G8O/G8H medium borderline
Csinscaffold002090165980.1 Alkaloid G8O/G8H medium borderline
Csinscaffold002710176420.1 Alkaloid G8O/G8H medium borderline
Csinscaffold004040192580.2 Alkaloid G8O/G8H low borderline
Csinscaffold004130193430.1 Alkaloid G8O/G8H medium borderline
Csinscaffold004130193440.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005100200440.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005380202000.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005850204290.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005850204310.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005940204810.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005940204830.1 Alkaloid G8O/G8H medium borderline
Csinscaffold006130205760.1 Alkaloid G8O/G8H medium borderline
Csinscaffold006300206500.4 Alkaloid G8O/G8H low borderline
Csinscaffold006980209000.1 Alkaloid G8O/G8H medium borderline
Csinscaffold009750215410.1 Alkaloid G8O/G8H medium borderline
Csinscaffold011250217970.1 Alkaloid G8O/G8H low borderline
Csinscaffold013570220670.1 Alkaloid G8O/G8H medium borderline
Csinscaffold013910221080.1 Alkaloid G8O/G8H medium borderline
Csinscaffold014300221490.1 Alkaloid G8O/G8H medium pass
Csinscaffold019480225370.1 Alkaloid G8O/G8H medium borderline
Csinscaffold023250227550.1 Alkaloid G8O/G8H medium borderline
Csinscaffold024770228430.1 Alkaloid G8O/G8H medium borderline
Csinscaffold029780230830.1 Alkaloid G8O/G8H low borderline
Csinscaffold031590231450.1 Alkaloid G8O/G8H low borderline
Csinscaffold037820233940.1 Alkaloid G8O/G8H medium borderline
Csinscaffold045600236160.1 Alkaloid G8O/G8H medium pass
Csinscaffold045600236160.2 Alkaloid G8O/G8H medium pass
Csinscaffold046670236370.1 Alkaloid G8O/G8H medium borderline