Citrus sinensis (citrus_sinensis)
Imported from atlas release summary for Citrus sinensis.
2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2333
Candidate Genes
BAHD
6.2%
4CL
5.65%
C4H
5.65%
C3'H/CYP98A
4.96%
NMT
3.77%
POD
3.66%
CYP76
3.64%
UGT
3.47%
Other Families
62.99%
More Families (97)
IFS
178
3.16%
7DLGT
161
2.86%
UFGT
154
2.74%
T3O
152
2.7%
F3H
148
2.63%
STR
122
2.17%
CAS
111
1.97%
F3'H/CYP75B
108
1.92%
CODM/T6ODM
105
1.87%
DWF4/CYP90B1
94
1.67%
BR6OX2/CYP85A2
92
1.64%
IFR
88
1.56%
CAD
87
1.55%
CYP71
85
1.51%
TPS
82
1.46%
SMT1/SMT2/SMT3
73
1.3%
COMT
72
1.28%
GES
71
1.26%
SGD
61
1.08%
G8O/G8H
61
1.08%
H6H
60
1.07%
TRI/TRII
59
1.05%
GS
54
0.96%
CYP90D1
52
0.92%
T16H
47
0.84%
TAT
45
0.8%
8HGO
43
0.76%
BBE
41
0.73%
LAC
39
0.69%
ANR
38
0.68%
16OMT
37
0.66%
CSE
36
0.64%
PYKS
34
0.6%
CCR
34
0.6%
IO
32
0.57%
HCT
32
0.57%
SLS
30
0.53%
FNS
29
0.52%
AACT
29
0.52%
F5H/CYP84A
28
0.5%
RAS
28
0.5%
CPD/CYP90A1
27
0.48%
GGPPS
27
0.48%
CCoAOMT
26
0.46%
CPR
26
0.46%
DFR
25
0.44%
PMT
24
0.43%
COR
24
0.43%
LAMT
24
0.43%
CNMT
23
0.41%
7DLH
23
0.41%
NCS
21
0.37%
F3'5'H/CYP75A
21
0.37%
MPO
16
0.28%
ISY
16
0.28%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CYP51G1
15
0.27%
SQS/FDFT1
14
0.25%
MCT/IspD
14
0.25%
TYDC_DDC
12
0.21%
MVD
12
0.21%
DXS
11
0.2%
CYP719
10
0.18%
CHS
10
0.18%
HMGS
10
0.18%
BR6OX1/CYP85A1
9
0.16%
HDS/IspG
9
0.16%
HDR/IspH
9
0.16%
HPPR
8
0.14%
ROT3/CYP90C1
8
0.14%
FPPS
8
0.14%
CYP80B1
7
0.12%
6OMT_4OMT_SOMT
7
0.12%
DXR
7
0.12%
XMT_MXMT_DXMT
6
0.11%
CHI
6
0.11%
SQE
6
0.11%
IDI
6
0.11%
ODC
5
0.09%
DWF7
5
0.09%
MVK
5
0.09%
HYD1
4
0.07%
HMGR
4
0.07%
TDC
3
0.05%
ADC
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
DWF1
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
MDS/IspF
3
0.05%
DET2
2
0.04%
CMK/IspE
2
0.04%
FK
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 705 | 19 | BAHD (287) | View species results |
| Alkaloid pathway | 549 | 25 | NMT (96) | View species results |
| Phenylpropanoid pathway | 468 | 13 | POD (203) | View species results |
| Flavonoid pathway | 232 | 15 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (66) | View species results |
| Steroid pathway | 188 | 14 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1881 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 409 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csinscaffold000590116320.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000610117380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000700123510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.10 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.7 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.8 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128630.9 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128640.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128640.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128660.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128680.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000800128710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000970136690.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.11 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.7 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.8 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001050140430.9 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001750159260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold001750159260.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold002000164590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold002160166960.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold002540173210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csinscaffold002540173210.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csinscaffold002720176450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold002770177160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold002770177160.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold002770177190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold002770177190.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold003030180590.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold003230182920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |