PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold002520172780.1 Alkaloid T3O medium pass
Csinscaffold002530173040.1 Alkaloid T3O medium borderline
Csinscaffold002530173040.2 Alkaloid T3O medium borderline
Csinscaffold002710176430.1 Alkaloid T3O medium borderline
Csinscaffold002880178800.1 Alkaloid T3O medium borderline
Csinscaffold003120181870.1 Alkaloid T3O medium borderline
Csinscaffold003460185990.1 Alkaloid T3O medium borderline
Csinscaffold003460186000.1 Alkaloid T3O medium borderline
Csinscaffold003620188270.1 Alkaloid T3O low borderline
Csinscaffold004080193210.1 Alkaloid T3O low borderline
Csinscaffold004170193910.1 Alkaloid T3O medium pass
Csinscaffold004170193920.1 Alkaloid T3O medium pass
Csinscaffold004530196760.1 Alkaloid T3O medium borderline
Csinscaffold005010199940.1 Alkaloid T3O medium borderline
Csinscaffold005080200300.1 Alkaloid T3O medium borderline
Csinscaffold005080200320.1 Alkaloid T3O medium borderline
Csinscaffold005100200460.1 Alkaloid T3O medium borderline
Csinscaffold005490202540.1 Alkaloid T3O medium borderline
Csinscaffold006300206500.1 Alkaloid T3O medium pass
Csinscaffold006300206500.2 Alkaloid T3O medium pass
Csinscaffold006300206500.5 Alkaloid T3O medium pass
Csinscaffold006370206810.1 Alkaloid T3O medium borderline
Csinscaffold006470207250.1 Alkaloid T3O medium pass
Csinscaffold007170209550.1 Alkaloid T3O medium borderline
Csinscaffold007820211530.1 Alkaloid T3O medium borderline
Csinscaffold010870217490.1 Alkaloid T3O medium borderline
Csinscaffold010870217510.1 Alkaloid T3O medium borderline
Csinscaffold010870217520.1 Alkaloid T3O medium borderline
Csinscaffold011560218410.1 Alkaloid T3O medium pass
Csinscaffold011900218950.1 Alkaloid T3O medium borderline
Csinscaffold013690220800.1 Alkaloid T3O medium borderline
Csinscaffold015340222370.1 Alkaloid T3O medium borderline
Csinscaffold016700223400.1 Alkaloid T3O medium borderline
Csinscaffold019480225360.1 Alkaloid T3O medium borderline
Csinscaffold023480227730.1 Alkaloid T3O medium borderline
Csinscaffold028350230220.1 Alkaloid T3O medium borderline
Csinscaffold028350230230.1 Alkaloid T3O medium pass
Csinscaffold033190232100.1 Alkaloid T3O medium borderline
Csinscaffold034450232690.1 Alkaloid T3O medium borderline
Csinscaffold036860233630.1 Alkaloid T3O medium borderline
Csinscaffold039280234420.1 Alkaloid T3O medium borderline
Csinscaffold040770234790.1 Alkaloid T3O medium borderline
Csinscaffold042750235320.1 Alkaloid T3O medium borderline
Csinscaffold051870237850.1 Alkaloid T3O medium borderline
Csinscaffold060250239880.1 Alkaloid T3O medium pass
Csinscaffold067130241630.1 Alkaloid T3O medium borderline
Csinscaffold074980243410.1 Alkaloid T3O medium borderline
Csinscaffold084460245380.1 Alkaloid T3O medium borderline
Csinscaffold086020245940.1 Alkaloid T3O medium borderline
Csinscaffold086810246050.1 Alkaloid T3O medium borderline