PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
Csinscaffold003690189320.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Csinscaffold003710189420.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold003790190450.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold004020192260.1 Terpenoid TPS medium pass TPS__00024__sp_A0A1V0QSG1_T13PK_CANSA
Csinscaffold004020192270.1 Terpenoid TPS medium pass TPS__00021__sp_A0A1V0QSF8_TS3FN_CANSA
Csinscaffold004770198230.1 Terpenoid TPS medium pass TPS__00024__sp_A0A1V0QSG1_T13PK_CANSA
Csinscaffold004770198240.1 Terpenoid TPS medium pass TPS__00024__sp_A0A1V0QSG1_T13PK_CANSA
Csinscaffold005670203720.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold005670203730.1 Terpenoid TPS medium pass TPS__00024__sp_A0A1V0QSG1_T13PK_CANSA
Csinscaffold006800208420.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Csinscaffold008470212910.1 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Csinscaffold008470212920.1 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Csinscaffold008470212930.1 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Csinscaffold010500216760.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold010500216770.1 Terpenoid TPS medium pass TPS__00055__sp_A7IZZ1_TPS1_CANSA
Csinscaffold011860218870.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold011860218890.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold026910229500.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold033340232200.1 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Csinscaffold034780232850.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Csinscaffold034780232850.2 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Csinscaffold034780232850.3 Terpenoid TPS medium pass TPS__00051__sp_A0A7G5KLV1_TPS2_CANOD
Csinscaffold034780232850.4 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Csinscaffold034780232850.5 Terpenoid TPS medium pass TPS__00051__sp_A0A7G5KLV1_TPS2_CANOD
Csinscaffold034780232850.6 Terpenoid TPS medium pass TPS__00117__sp_G8H5M7_TPS9_SOLHA
Csinscaffold034780232850.7 Terpenoid TPS medium pass TPS__00051__sp_A0A7G5KLV1_TPS2_CANOD
Csinscaffold034780232850.8 Terpenoid TPS medium pass TPS__00051__sp_A0A7G5KLV1_TPS2_CANOD
Csinscaffold047360236620.1 Terpenoid TPS medium pass TPS__00047__sp_A0A4Y5QWA6_T18VF_CANSA
Csinscaffold050960237640.1 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Csinscaffold058980239610.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Csinscaffold101800249200.1 Terpenoid TPS medium pass TPS__00024__sp_A0A1V0QSG1_T13PK_CANSA
Csinscaffold102230249270.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO