PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Csinscaffold000360097750.1 Flavonoid UFGT high pass
Csinscaffold000360097760.1 Flavonoid UFGT medium pass
Csinscaffold000360097840.1 Flavonoid UFGT medium pass
Csinscaffold000360098020.1 Flavonoid UFGT high pass
Csinscaffold000360098040.1 Flavonoid UFGT medium pass
Csinscaffold000480107080.1 Flavonoid UFGT high pass
Csinscaffold000550113130.1 Flavonoid UFGT high pass
Csinscaffold000550113150.1 Flavonoid UFGT medium pass
Csinscaffold000590115620.1 Flavonoid UFGT high pass
Csinscaffold000590116400.1 Flavonoid UFGT high pass
Csinscaffold000610117540.1 Flavonoid UFGT medium pass
Csinscaffold000620118720.1 Flavonoid UFGT medium pass
Csinscaffold000620118730.1 Flavonoid UFGT medium pass
Csinscaffold000650120240.1 Flavonoid UFGT high pass
Csinscaffold000650120270.1 Flavonoid UFGT medium pass
Csinscaffold000650120290.1 Flavonoid UFGT medium pass
Csinscaffold000650120340.1 Flavonoid UFGT low borderline
Csinscaffold000650120590.1 Flavonoid UFGT high pass
Csinscaffold000670121210.1 Flavonoid UFGT low borderline
Csinscaffold000670121210.2 Flavonoid UFGT low borderline
Csinscaffold000670121210.3 Flavonoid UFGT low borderline
Csinscaffold000730124990.1 Flavonoid UFGT high pass
Csinscaffold000730125020.1 Flavonoid UFGT high pass
Csinscaffold000730125020.2 Flavonoid UFGT high pass
Csinscaffold000730125020.3 Flavonoid UFGT medium pass
Csinscaffold000740125620.1 Flavonoid UFGT high pass
Csinscaffold000740125940.1 Flavonoid UFGT high pass
Csinscaffold000740125950.1 Flavonoid UFGT high pass
Csinscaffold000760126810.1 Flavonoid UFGT high pass
Csinscaffold000830129900.1 Flavonoid UFGT medium pass
Csinscaffold000970136640.1 Flavonoid UFGT high pass
Csinscaffold000970136650.1 Flavonoid UFGT low borderline
Csinscaffold000970136700.1 Flavonoid UFGT high pass
Csinscaffold000970136710.1 Flavonoid UFGT high pass
Csinscaffold000970136730.1 Flavonoid UFGT medium pass
Csinscaffold001220145790.1 Flavonoid UFGT medium pass
Csinscaffold001220145980.1 Flavonoid UFGT high pass
Csinscaffold001220145990.1 Flavonoid UFGT medium pass
Csinscaffold001220146000.1 Flavonoid UFGT medium pass
Csinscaffold001220146010.1 Flavonoid UFGT medium pass
Csinscaffold001240146710.1 Flavonoid UFGT high pass
Csinscaffold001280147790.1 Flavonoid UFGT low borderline
Csinscaffold001430151580.1 Flavonoid UFGT medium pass
Csinscaffold001500153010.1 Flavonoid UFGT medium pass
Csinscaffold001500153020.1 Flavonoid UFGT high pass
Csinscaffold001500153030.1 Flavonoid UFGT medium pass
Csinscaffold001600155760.1 Flavonoid UFGT medium pass
Csinscaffold001600155770.1 Flavonoid UFGT medium pass
Csinscaffold001600155780.1 Flavonoid UFGT medium pass
Csinscaffold001600155790.1 Flavonoid UFGT high pass