PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold000230080950.1 Phenylpropanoid CSE medium pass
Csinscaffold000230081060.1 Phenylpropanoid CSE low borderline
Csinscaffold000240082520.1 Phenylpropanoid CSE medium pass
Csinscaffold000240082530.1 Phenylpropanoid CSE medium pass
Csinscaffold000410100720.1 Phenylpropanoid CSE medium pass
Csinscaffold000650120350.1 Phenylpropanoid CSE medium pass
Csinscaffold002370170640.1 Phenylpropanoid CSE medium pass
Csinscaffold002860178340.1 Phenylpropanoid CSE medium pass
Csinscaffold003150182130.1 Phenylpropanoid CSE medium pass
Csinscaffold003650188730.1 Phenylpropanoid CSE medium pass
Csinscaffold057600239250.1 Phenylpropanoid CSE medium pass
Csinscaffold061350240150.1 Phenylpropanoid CSE medium pass
Csinscaffold000060034800.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000090046480.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000170065850.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000320092880.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000320092890.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000430103300.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000430103320.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000430103330.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000430103340.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000490108170.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000810128790.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000900133010.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold001220146100.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold002880178810.1 Phenylpropanoid F5H/CYP84A medium pass
Csinscaffold003460186070.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold005850204300.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold006980209000.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold008510213040.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold009750215410.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold010870217500.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold011900218950.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold014590221720.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold048600237010.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold079340244320.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold080230244550.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold086810246050.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold101530249160.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold124270253490.1 Phenylpropanoid F5H/CYP84A medium borderline
Csinscaffold000010005820.1 Phenylpropanoid HCT low borderline
Csinscaffold000020013430.1 Phenylpropanoid HCT low borderline
Csinscaffold000030017530.1 Phenylpropanoid HCT low borderline
Csinscaffold000050032050.1 Phenylpropanoid HCT low borderline
Csinscaffold000170066130.3 Phenylpropanoid HCT low borderline
Csinscaffold000210075330.1 Phenylpropanoid HCT low borderline
Csinscaffold000210075970.1 Phenylpropanoid HCT low borderline
Csinscaffold000380098960.1 Phenylpropanoid HCT medium pass
Csinscaffold000500108300.1 Phenylpropanoid HCT medium pass
Csinscaffold000540112420.1 Phenylpropanoid HCT low borderline