PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold003550187210.1 Alkaloid IO medium borderline
Csinscaffold005470202520.1 Alkaloid IO medium borderline
Csinscaffold006370206770.1 Alkaloid IO medium borderline
Csinscaffold006370206780.1 Alkaloid IO low borderline
Csinscaffold006370206790.1 Alkaloid IO low borderline
Csinscaffold007960211860.2 Alkaloid IO low borderline
Csinscaffold008510213040.1 Alkaloid IO medium borderline
Csinscaffold009070214230.1 Alkaloid IO medium borderline
Csinscaffold021220226540.1 Alkaloid IO medium borderline
Csinscaffold052710238080.1 Alkaloid IO medium pass
Csinscaffold066810241520.1 Alkaloid IO medium borderline
Csinscaffold119870252800.1 Alkaloid IO medium borderline
Csinscaffold000040027480.1 Alkaloid ISY medium pass
Csinscaffold000040027480.2 Alkaloid ISY medium pass
Csinscaffold000040027480.3 Alkaloid ISY medium pass
Csinscaffold000080041960.1 Alkaloid ISY low borderline
Csinscaffold000260085700.1 Alkaloid ISY medium pass
Csinscaffold001350149610.1 Alkaloid ISY medium pass
Csinscaffold001350149620.1 Alkaloid ISY medium pass
Csinscaffold001350149620.2 Alkaloid ISY medium pass
Csinscaffold001440152200.1 Alkaloid ISY medium pass
Csinscaffold003080181260.1 Alkaloid ISY medium pass
Csinscaffold003080181270.1 Alkaloid ISY medium pass
Csinscaffold003080181270.2 Alkaloid ISY medium pass
Csinscaffold003080181280.1 Alkaloid ISY medium pass
Csinscaffold093290247450.1 Alkaloid ISY medium pass
Csinscaffold098180248380.1 Alkaloid ISY medium pass
Csinscaffold105890250080.1 Alkaloid ISY medium pass
Csinscaffold000170065820.1 Alkaloid LAMT medium borderline
Csinscaffold000170065820.2 Alkaloid LAMT medium borderline
Csinscaffold000170065820.3 Alkaloid LAMT medium borderline
Csinscaffold000210075890.1 Alkaloid LAMT medium borderline
Csinscaffold000340095880.1 Alkaloid LAMT medium pass
Csinscaffold000400099730.1 Alkaloid LAMT low borderline
Csinscaffold000400099730.3 Alkaloid LAMT low borderline
Csinscaffold000420101970.1 Alkaloid LAMT medium borderline
Csinscaffold000420101980.1 Alkaloid LAMT medium borderline
Csinscaffold000490107610.1 Alkaloid LAMT medium pass
Csinscaffold000580115110.1 Alkaloid LAMT medium borderline
Csinscaffold000580115120.1 Alkaloid LAMT medium borderline
Csinscaffold000580115130.1 Alkaloid LAMT medium borderline
Csinscaffold000970136450.1 Alkaloid LAMT medium borderline
Csinscaffold001230146660.1 Alkaloid LAMT medium borderline
Csinscaffold001410151220.1 Alkaloid LAMT medium borderline
Csinscaffold001410151270.1 Alkaloid LAMT medium borderline
Csinscaffold002870178720.1 Alkaloid LAMT medium borderline
Csinscaffold002910179150.1 Alkaloid LAMT medium borderline
Csinscaffold004410195880.1 Alkaloid LAMT medium borderline
Csinscaffold004570197080.1 Alkaloid LAMT medium borderline
Csinscaffold010980217640.1 Alkaloid LAMT medium borderline