Citrus sinensis (citrus_sinensis)
Imported from atlas release summary for Citrus sinensis.
2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5625
Family-Level Calls
BAHD
6.2%
4CL
5.65%
C4H
5.65%
C3'H/CYP98A
4.96%
NMT
3.77%
POD
3.66%
CYP76
3.64%
UGT
3.47%
Other Families
62.99%
More Families (97)
IFS
178
3.16%
7DLGT
161
2.86%
UFGT
154
2.74%
T3O
152
2.7%
F3H
148
2.63%
STR
122
2.17%
CAS
111
1.97%
F3'H/CYP75B
108
1.92%
CODM/T6ODM
105
1.87%
DWF4/CYP90B1
94
1.67%
BR6OX2/CYP85A2
92
1.64%
IFR
88
1.56%
CAD
87
1.55%
CYP71
85
1.51%
TPS
82
1.46%
SMT1/SMT2/SMT3
73
1.3%
COMT
72
1.28%
GES
71
1.26%
SGD
61
1.08%
G8O/G8H
61
1.08%
H6H
60
1.07%
TRI/TRII
59
1.05%
GS
54
0.96%
CYP90D1
52
0.92%
T16H
47
0.84%
TAT
45
0.8%
8HGO
43
0.76%
BBE
41
0.73%
LAC
39
0.69%
ANR
38
0.68%
16OMT
37
0.66%
CSE
36
0.64%
PYKS
34
0.6%
CCR
34
0.6%
IO
32
0.57%
HCT
32
0.57%
SLS
30
0.53%
FNS
29
0.52%
AACT
29
0.52%
F5H/CYP84A
28
0.5%
RAS
28
0.5%
CPD/CYP90A1
27
0.48%
GGPPS
27
0.48%
CCoAOMT
26
0.46%
CPR
26
0.46%
DFR
25
0.44%
PMT
24
0.43%
COR
24
0.43%
LAMT
24
0.43%
CNMT
23
0.41%
7DLH
23
0.41%
NCS
21
0.37%
F3'5'H/CYP75A
21
0.37%
MPO
16
0.28%
ISY
16
0.28%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CYP51G1
15
0.27%
SQS/FDFT1
14
0.25%
MCT/IspD
14
0.25%
TYDC_DDC
12
0.21%
MVD
12
0.21%
DXS
11
0.2%
CYP719
10
0.18%
CHS
10
0.18%
HMGS
10
0.18%
BR6OX1/CYP85A1
9
0.16%
HDS/IspG
9
0.16%
HDR/IspH
9
0.16%
HPPR
8
0.14%
ROT3/CYP90C1
8
0.14%
FPPS
8
0.14%
CYP80B1
7
0.12%
6OMT_4OMT_SOMT
7
0.12%
DXR
7
0.12%
XMT_MXMT_DXMT
6
0.11%
CHI
6
0.11%
SQE
6
0.11%
IDI
6
0.11%
ODC
5
0.09%
DWF7
5
0.09%
MVK
5
0.09%
HYD1
4
0.07%
HMGR
4
0.07%
TDC
3
0.05%
ADC
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
DWF1
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
MDS/IspF
3
0.05%
DET2
2
0.04%
CMK/IspE
2
0.04%
FK
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 705 | 19 | BAHD (287) | View species results |
| Alkaloid pathway | 549 | 25 | NMT (96) | View species results |
| Phenylpropanoid pathway | 468 | 13 | POD (203) | View species results |
| Flavonoid pathway | 232 | 15 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (66) | View species results |
| Steroid pathway | 188 | 14 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1881 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 409 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csinscaffold002410171240.3 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Csinscaffold002410171240.4 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Csinscaffold002410171250.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Csinscaffold014810221850.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Csinscaffold064760240980.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Csinscaffold000020010600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000050028540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000050031970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000050031970.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000050031970.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000050031970.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000050031970.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000050031970.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000060032230.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000120053510.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000130057150.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Csinscaffold000130057150.2 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Csinscaffold000130057150.3 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Csinscaffold000130057170.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Csinscaffold000130057180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csinscaffold000130057180.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csinscaffold000130057180.3 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csinscaffold000140060190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000150060580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000160065310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000170067670.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Csinscaffold000180069580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000180069580.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000180069580.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000180069580.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000180069580.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000180069580.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000180069580.7 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000180069580.8 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000190071480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000190071680.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csinscaffold000240082660.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000260085690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000300090520.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csinscaffold000340095740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000340095740.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000340095740.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000410100770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000450104440.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000530111840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000540112340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000540112350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000560113860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000560113860.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csinscaffold000560113860.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |