PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold000770126930.1 Alkaloid T3O medium borderline
Csinscaffold000770126950.1 Alkaloid T3O medium borderline
Csinscaffold000860131280.1 Alkaloid T3O medium borderline
Csinscaffold000860131290.1 Alkaloid T3O medium borderline
Csinscaffold000920134060.1 Alkaloid T3O medium borderline
Csinscaffold001130142910.1 Alkaloid T3O medium borderline
Csinscaffold001130142920.1 Alkaloid T3O medium borderline
Csinscaffold001130143040.1 Alkaloid T3O medium borderline
Csinscaffold001190144740.1 Alkaloid T3O medium pass
Csinscaffold001190144740.2 Alkaloid T3O medium pass
Csinscaffold001190144740.3 Alkaloid T3O medium pass
Csinscaffold001190144740.4 Alkaloid T3O medium pass
Csinscaffold001310148580.1 Alkaloid T3O medium borderline
Csinscaffold001310148600.1 Alkaloid T3O medium borderline
Csinscaffold001570154790.1 Alkaloid T3O medium pass
Csinscaffold001580155270.1 Alkaloid T3O low borderline
Csinscaffold001780160080.1 Alkaloid T3O medium pass
Csinscaffold001830161020.1 Alkaloid T3O medium borderline
Csinscaffold001860161600.1 Alkaloid T3O medium pass
Csinscaffold001860161610.1 Alkaloid T3O medium pass
Csinscaffold002090165990.1 Alkaloid T3O medium borderline
Csinscaffold002100166150.1 Alkaloid T3O medium borderline
Csinscaffold002210167940.1 Alkaloid T3O medium borderline
Csinscaffold002250168630.1 Alkaloid T3O medium borderline
Csinscaffold002520172780.1 Alkaloid T3O medium pass
Csinscaffold002530173040.1 Alkaloid T3O medium borderline
Csinscaffold002530173040.2 Alkaloid T3O medium borderline
Csinscaffold002710176430.1 Alkaloid T3O medium borderline
Csinscaffold002880178800.1 Alkaloid T3O medium borderline
Csinscaffold003120181870.1 Alkaloid T3O medium borderline
Csinscaffold003460185990.1 Alkaloid T3O medium borderline
Csinscaffold003460186000.1 Alkaloid T3O medium borderline
Csinscaffold003620188270.1 Alkaloid T3O low borderline
Csinscaffold004080193210.1 Alkaloid T3O low borderline
Csinscaffold004170193910.1 Alkaloid T3O medium pass
Csinscaffold004170193920.1 Alkaloid T3O medium pass
Csinscaffold004530196760.1 Alkaloid T3O medium borderline
Csinscaffold005010199940.1 Alkaloid T3O medium borderline
Csinscaffold005080200300.1 Alkaloid T3O medium borderline
Csinscaffold005080200320.1 Alkaloid T3O medium borderline
Csinscaffold005100200460.1 Alkaloid T3O medium borderline
Csinscaffold005490202540.1 Alkaloid T3O medium borderline
Csinscaffold006300206500.1 Alkaloid T3O medium pass
Csinscaffold006300206500.2 Alkaloid T3O medium pass
Csinscaffold006300206500.5 Alkaloid T3O medium pass
Csinscaffold006370206810.1 Alkaloid T3O medium borderline
Csinscaffold006470207250.1 Alkaloid T3O medium pass
Csinscaffold007170209550.1 Alkaloid T3O medium borderline
Csinscaffold007820211530.1 Alkaloid T3O medium borderline
Csinscaffold010870217490.1 Alkaloid T3O medium borderline