PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold010870217510.1 Alkaloid T3O medium borderline
Csinscaffold010870217520.1 Alkaloid T3O medium borderline
Csinscaffold011560218410.1 Alkaloid T3O medium pass
Csinscaffold011900218950.1 Alkaloid T3O medium borderline
Csinscaffold013690220800.1 Alkaloid T3O medium borderline
Csinscaffold015340222370.1 Alkaloid T3O medium borderline
Csinscaffold016700223400.1 Alkaloid T3O medium borderline
Csinscaffold019480225360.1 Alkaloid T3O medium borderline
Csinscaffold023480227730.1 Alkaloid T3O medium borderline
Csinscaffold028350230220.1 Alkaloid T3O medium borderline
Csinscaffold028350230230.1 Alkaloid T3O medium pass
Csinscaffold033190232100.1 Alkaloid T3O medium borderline
Csinscaffold034450232690.1 Alkaloid T3O medium borderline
Csinscaffold036860233630.1 Alkaloid T3O medium borderline
Csinscaffold039280234420.1 Alkaloid T3O medium borderline
Csinscaffold040770234790.1 Alkaloid T3O medium borderline
Csinscaffold042750235320.1 Alkaloid T3O medium borderline
Csinscaffold051870237850.1 Alkaloid T3O medium borderline
Csinscaffold060250239880.1 Alkaloid T3O medium pass
Csinscaffold067130241630.1 Alkaloid T3O medium borderline
Csinscaffold074980243410.1 Alkaloid T3O medium borderline
Csinscaffold084460245380.1 Alkaloid T3O medium borderline
Csinscaffold086020245940.1 Alkaloid T3O medium borderline
Csinscaffold086810246050.1 Alkaloid T3O medium borderline
Csinscaffold116120252160.1 Alkaloid T3O medium borderline
Csinscaffold118350252480.1 Alkaloid T3O medium borderline
Csinscaffold000020009560.1 Alkaloid TDC low borderline
Csinscaffold000020009560.2 Alkaloid TDC low borderline
Csinscaffold047700236750.1 Alkaloid TDC medium borderline
Csinscaffold000010002700.1 Alkaloid TRI/TRII low borderline
Csinscaffold000010002740.1 Alkaloid TRI/TRII low borderline
Csinscaffold000010002740.2 Alkaloid TRI/TRII low borderline
Csinscaffold000010005990.1 Alkaloid TRI/TRII medium pass
Csinscaffold000010006050.1 Alkaloid TRI/TRII medium pass
Csinscaffold000010008460.1 Alkaloid TRI/TRII medium pass
Csinscaffold000010008460.2 Alkaloid TRI/TRII medium pass
Csinscaffold000030017340.1 Alkaloid TRI/TRII medium pass
Csinscaffold000070039240.1 Alkaloid TRI/TRII medium pass
Csinscaffold000070039250.1 Alkaloid TRI/TRII medium pass
Csinscaffold000070039250.2 Alkaloid TRI/TRII medium pass
Csinscaffold000080042320.4 Alkaloid TRI/TRII medium pass
Csinscaffold000080042320.5 Alkaloid TRI/TRII low borderline
Csinscaffold000080042320.6 Alkaloid TRI/TRII low borderline
Csinscaffold000080042320.7 Alkaloid TRI/TRII low borderline
Csinscaffold000180068880.1 Alkaloid TRI/TRII medium pass
Csinscaffold000180068890.1 Alkaloid TRI/TRII medium pass
Csinscaffold000180068900.1 Alkaloid TRI/TRII medium pass
Csinscaffold000180068910.1 Alkaloid TRI/TRII medium pass
Csinscaffold000210076320.1 Alkaloid TRI/TRII medium pass
Csinscaffold000210076320.2 Alkaloid TRI/TRII medium pass