PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
Csinscaffold001920162800.1 Flavonoid ANS/LDOX medium borderline
Csinscaffold002250168610.1 Flavonoid ANS/LDOX medium pass
Csinscaffold004390195750.1 Flavonoid ANS/LDOX low borderline
Csinscaffold004390195810.1 Flavonoid ANS/LDOX low borderline
Csinscaffold004390195820.1 Flavonoid ANS/LDOX low borderline
Csinscaffold007390210310.1 Flavonoid ANS/LDOX medium borderline
Csinscaffold007390210350.1 Flavonoid ANS/LDOX medium borderline
Csinscaffold020550226170.1 Flavonoid ANS/LDOX medium borderline
Csinscaffold028050230120.1 Flavonoid ANS/LDOX medium borderline
Csinscaffold000020010710.1 Flavonoid C4H low borderline
Csinscaffold000030017930.1 Flavonoid C4H low borderline
Csinscaffold000200073270.1 Flavonoid C4H medium borderline
Csinscaffold003550187210.1 Flavonoid C4H medium borderline
Csinscaffold004040192580.1 Flavonoid C4H medium pass
Csinscaffold004040192580.2 Flavonoid C4H medium pass
Csinscaffold004420195950.1 Flavonoid C4H medium borderline
Csinscaffold005470202500.1 Flavonoid C4H medium borderline
Csinscaffold005940204830.1 Flavonoid C4H low borderline
Csinscaffold006300206500.5 Flavonoid C4H low borderline
Csinscaffold009070214260.1 Flavonoid C4H low borderline
Csinscaffold080230244550.1 Flavonoid C4H medium borderline
Csinscaffold000130056210.1 Flavonoid CHI low borderline
Csinscaffold000130056210.2 Flavonoid CHI low borderline
Csinscaffold000130056210.3 Flavonoid CHI low borderline
Csinscaffold000130056210.4 Flavonoid CHI low borderline
Csinscaffold000240082620.1 Flavonoid CHI medium pass
Csinscaffold022870227380.1 Flavonoid CHI medium pass
Csinscaffold000010001010.1 Flavonoid CHS medium pass
Csinscaffold000040024150.1 Flavonoid CHS medium pass
Csinscaffold000040024150.2 Flavonoid CHS medium pass
Csinscaffold000040024160.1 Flavonoid CHS medium pass
Csinscaffold002200167700.1 Flavonoid CHS medium pass
Csinscaffold002880178760.1 Flavonoid CHS medium pass
Csinscaffold002880178770.1 Flavonoid CHS medium pass
Csinscaffold003580187700.1 Flavonoid CHS medium pass
Csinscaffold004500196570.1 Flavonoid CHS medium pass
Csinscaffold012140219120.1 Flavonoid CHS medium pass
Csinscaffold000030022430.1 Flavonoid DFR medium borderline
Csinscaffold000030022440.1 Flavonoid DFR medium pass
Csinscaffold000030022450.10 Flavonoid DFR medium borderline
Csinscaffold000030022450.2 Flavonoid DFR medium borderline
Csinscaffold000030022450.4 Flavonoid DFR medium borderline
Csinscaffold000030022450.5 Flavonoid DFR medium borderline
Csinscaffold000030022450.6 Flavonoid DFR medium borderline
Csinscaffold000030022450.7 Flavonoid DFR medium borderline
Csinscaffold000230081190.1 Flavonoid DFR medium borderline
Csinscaffold001340149500.1 Flavonoid DFR medium borderline
Csinscaffold001340149500.2 Flavonoid DFR medium borderline
Csinscaffold001340149500.3 Flavonoid DFR medium borderline
Csinscaffold002550173490.1 Flavonoid DFR low borderline