Citrus sinensis (citrus_sinensis)
Imported from atlas release summary for Citrus sinensis.
2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2333
Candidate Genes
BAHD
6.2%
4CL
5.65%
C4H
5.65%
C3'H/CYP98A
4.96%
NMT
3.77%
POD
3.66%
CYP76
3.64%
UGT
3.47%
Other Families
62.99%
More Families (97)
IFS
178
3.16%
7DLGT
161
2.86%
UFGT
154
2.74%
T3O
152
2.7%
F3H
148
2.63%
STR
122
2.17%
CAS
111
1.97%
F3'H/CYP75B
108
1.92%
CODM/T6ODM
105
1.87%
DWF4/CYP90B1
94
1.67%
BR6OX2/CYP85A2
92
1.64%
IFR
88
1.56%
CAD
87
1.55%
CYP71
85
1.51%
TPS
82
1.46%
SMT1/SMT2/SMT3
73
1.3%
COMT
72
1.28%
GES
71
1.26%
SGD
61
1.08%
G8O/G8H
61
1.08%
H6H
60
1.07%
TRI/TRII
59
1.05%
GS
54
0.96%
CYP90D1
52
0.92%
T16H
47
0.84%
TAT
45
0.8%
8HGO
43
0.76%
BBE
41
0.73%
LAC
39
0.69%
ANR
38
0.68%
16OMT
37
0.66%
CSE
36
0.64%
PYKS
34
0.6%
CCR
34
0.6%
IO
32
0.57%
HCT
32
0.57%
SLS
30
0.53%
FNS
29
0.52%
AACT
29
0.52%
F5H/CYP84A
28
0.5%
RAS
28
0.5%
CPD/CYP90A1
27
0.48%
GGPPS
27
0.48%
CCoAOMT
26
0.46%
CPR
26
0.46%
DFR
25
0.44%
PMT
24
0.43%
COR
24
0.43%
LAMT
24
0.43%
CNMT
23
0.41%
7DLH
23
0.41%
NCS
21
0.37%
F3'5'H/CYP75A
21
0.37%
MPO
16
0.28%
ISY
16
0.28%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CYP51G1
15
0.27%
SQS/FDFT1
14
0.25%
MCT/IspD
14
0.25%
TYDC_DDC
12
0.21%
MVD
12
0.21%
DXS
11
0.2%
CYP719
10
0.18%
CHS
10
0.18%
HMGS
10
0.18%
BR6OX1/CYP85A1
9
0.16%
HDS/IspG
9
0.16%
HDR/IspH
9
0.16%
HPPR
8
0.14%
ROT3/CYP90C1
8
0.14%
FPPS
8
0.14%
CYP80B1
7
0.12%
6OMT_4OMT_SOMT
7
0.12%
DXR
7
0.12%
XMT_MXMT_DXMT
6
0.11%
CHI
6
0.11%
SQE
6
0.11%
IDI
6
0.11%
ODC
5
0.09%
DWF7
5
0.09%
MVK
5
0.09%
HYD1
4
0.07%
HMGR
4
0.07%
TDC
3
0.05%
ADC
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
DWF1
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
MDS/IspF
3
0.05%
DET2
2
0.04%
CMK/IspE
2
0.04%
FK
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 705 | 19 | BAHD (287) | View species results |
| Alkaloid pathway | 549 | 25 | NMT (96) | View species results |
| Phenylpropanoid pathway | 468 | 13 | POD (203) | View species results |
| Flavonoid pathway | 232 | 15 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (66) | View species results |
| Steroid pathway | 188 | 14 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1881 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 409 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csinscaffold000320093240.4 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Csinscaffold000320093240.5 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Csinscaffold000320093250.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Csinscaffold000320093250.2 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Csinscaffold000320093250.3 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Csinscaffold000320093250.4 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Csinscaffold000320093250.5 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Csinscaffold000320093400.1 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Csinscaffold000320093400.2 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Csinscaffold000320093400.3 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Csinscaffold000320093400.4 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Csinscaffold000320093400.5 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Csinscaffold000340095490.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Csinscaffold000350096300.1 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| Csinscaffold000350096410.1 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Csinscaffold000350096410.2 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Csinscaffold000350096410.3 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Csinscaffold000360097930.1 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Csinscaffold000360097930.2 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Csinscaffold000360097930.3 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Csinscaffold000360097930.4 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Csinscaffold000360097930.5 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Csinscaffold000360097930.6 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Csinscaffold000380098870.1 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Csinscaffold000380098960.1 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| Csinscaffold000400099860.1 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| Csinscaffold000400099860.2 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| Csinscaffold000400099860.3 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| Csinscaffold000400100550.1 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Csinscaffold000400100550.2 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Csinscaffold000400100550.3 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Csinscaffold000400100550.4 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Csinscaffold000460104960.1 | Terpenoid | BAHD | low | borderline | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| Csinscaffold000460104960.2 | Terpenoid | BAHD | low | borderline | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| Csinscaffold000460104960.3 | Terpenoid | BAHD | low | borderline | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| Csinscaffold000480106130.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Csinscaffold000490107720.1 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| Csinscaffold000490107730.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Csinscaffold000500108300.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Csinscaffold000540112420.1 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| Csinscaffold000540112800.1 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Csinscaffold000540112800.2 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Csinscaffold000540112800.3 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Csinscaffold000570114640.1 | Terpenoid | BAHD | medium | pass | BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH |
| Csinscaffold000580115060.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Csinscaffold000580115350.1 | Terpenoid | BAHD | medium | pass | BAHD__00095__sp_Q9SZ58_BRAT1_ARATH |
| Csinscaffold000600116790.1 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |
| Csinscaffold000600116790.2 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |
| Csinscaffold000600116790.3 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |
| Csinscaffold000600116790.4 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |