PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold078620244140.1 Rosmarinic Acid C4H low borderline
Csinscaffold079340244320.1 Rosmarinic Acid C4H low borderline
Csinscaffold080230244550.1 Rosmarinic Acid C4H low borderline
Csinscaffold084460245380.1 Rosmarinic Acid C4H medium pass
Csinscaffold086020245940.1 Rosmarinic Acid C4H low borderline
Csinscaffold086810246050.1 Rosmarinic Acid C4H low borderline
Csinscaffold092780247340.1 Rosmarinic Acid C4H low borderline
Csinscaffold101530249160.1 Rosmarinic Acid C4H low borderline
Csinscaffold103540249520.1 Rosmarinic Acid C4H low borderline
Csinscaffold114090251750.1 Rosmarinic Acid C4H medium pass
Csinscaffold116120252160.1 Rosmarinic Acid C4H medium pass
Csinscaffold118350252480.1 Rosmarinic Acid C4H medium pass
Csinscaffold119870252800.1 Rosmarinic Acid C4H low borderline
Csinscaffold124270253490.1 Rosmarinic Acid C4H low borderline
Csinscaffold000040023970.1 Rosmarinic Acid CPR medium pass
Csinscaffold000040023970.2 Rosmarinic Acid CPR medium pass
Csinscaffold000040023970.3 Rosmarinic Acid CPR medium pass
Csinscaffold000040023970.4 Rosmarinic Acid CPR medium pass
Csinscaffold000040023970.5 Rosmarinic Acid CPR medium pass
Csinscaffold000040023970.6 Rosmarinic Acid CPR medium pass
Csinscaffold000040023970.7 Rosmarinic Acid CPR low borderline
Csinscaffold000040026150.1 Rosmarinic Acid CPR medium pass
Csinscaffold000040026150.2 Rosmarinic Acid CPR medium pass
Csinscaffold000040026150.3 Rosmarinic Acid CPR medium pass
Csinscaffold000040026150.4 Rosmarinic Acid CPR medium pass
Csinscaffold000040026150.5 Rosmarinic Acid CPR medium pass
Csinscaffold000040026150.6 Rosmarinic Acid CPR medium pass
Csinscaffold000980137140.1 Rosmarinic Acid CPR medium pass
Csinscaffold000980137140.2 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.1 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.2 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.3 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.4 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.5 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.6 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.7 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.8 Rosmarinic Acid CPR medium pass
Csinscaffold004750198170.9 Rosmarinic Acid CPR medium pass
Csinscaffold019400225290.1 Rosmarinic Acid CPR low borderline
Csinscaffold048800237080.1 Rosmarinic Acid CPR low borderline
Csinscaffold000010002130.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000010002140.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000010002150.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000400100170.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000960135650.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000960135660.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000960135670.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000960135680.1 Rosmarinic Acid HPPR medium pass
Csinscaffold000840130670.1 Rosmarinic Acid PAL low borderline
Csinscaffold002010164680.1 Rosmarinic Acid PAL high pass