PlantSME Plant secondary metabolism enzyme database

Cocos nucifera (cocos_nucifera)

Imported from atlas release summary for Cocos nucifera.

1334
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.04% Alkaloid pathway 20.99% Phenylpropanoid pathway 20.76% Flavonoid pathway 15.82% Rosmarinic acid pathway 9.15% Steroid pathway 5.25%
Family Distribution
C4H 6.08% C3'H/CYP98A 5.83% BAHD 5.73% UGT 4.6% 4CL 4.35% POD 4.19% 7DLGT 4.16% UFGT 4.16%
Other Families 60.9%
More Families (96)
IFS 126 3.97% CYP76 109 3.43% T3O 108 3.4% F3H 75 2.36% DWF4/CYP90B1 75 2.36% NMT 62 1.95% STR 55 1.73% BR6OX2/CYP85A2 52 1.64% F3'H/CYP75B 51 1.61% SMT1/SMT2/SMT3 50 1.58% CODM/T6ODM 46 1.45% CYP71 46 1.45% H6H 41 1.29% IFR 36 1.13% CAD 36 1.13% PYKS 35 1.1% LAC 35 1.1% T16H 34 1.07% TRI/TRII 31 0.98% CSE 31 0.98% PMT 30 0.95% GS 28 0.88% FNS 27 0.85% HCT 27 0.85% CYP90D1 27 0.85% G8O/G8H 26 0.82% RAS 25 0.79% ANR 22 0.69% CCR 22 0.69% COMT 22 0.69% CAS 22 0.69% PAL 21 0.66% TPS 19 0.6% 16OMT 18 0.57% CYP51G1 18 0.57% GES 17 0.54% SLS 17 0.54% F5H/CYP84A 17 0.54% BR6OX1/CYP85A1 17 0.54% COR 16 0.5% SGD 16 0.5% IO 16 0.5% F3'5'H/CYP75A 16 0.5% 8HGO 15 0.47% TAT 15 0.47% NCS 14 0.44% CNMT 13 0.41% CHS 13 0.41% CPD/CYP90A1 13 0.41% DFR 12 0.38% CYP719 10 0.32% BBE 10 0.32% CYP80B1 9 0.28% ANS/LDOX 9 0.28% CPR 9 0.28% GGPPS 9 0.28% AACT 9 0.28% FPPS 9 0.28% 7DLH 8 0.25% HPPR 8 0.25% CHI 7 0.22% SQS/FDFT1 7 0.22% SMO1/SMO2 7 0.22% MPO 6 0.19% LAMT 6 0.19% FLS 6 0.19% CCoAOMT 6 0.19% DXS 6 0.19% TYDC_DDC 5 0.16% ISY 5 0.16% DET2 5 0.16% HMGR 5 0.16% TDC 4 0.13% ADC 4 0.13% MVK 4 0.13% ODC 3 0.09% ROT3/CYP90C1 3 0.09% DWF1 3 0.09% SQE 3 0.09% MVD 3 0.09% CMK/IspE 3 0.09% MCT/IspD 3 0.09% HMGS 3 0.09% XMT_MXMT_DXMT 2 0.06% DWF5 2 0.06% DWF7 2 0.06% IDI 2 0.06% PMK 2 0.06% DXR 2 0.06% HDS/IspG 2 0.06% MDS/IspF 2 0.06% CYP80F1 1 0.03% 6OMT_4OMT_SOMT 1 0.03% FK 1 0.03% HYD1 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 374 18 BAHD (143) View species results
Alkaloid pathway 280 20 7DLGT (73) View species results
Phenylpropanoid pathway 277 13 POD (118) View species results
Flavonoid pathway 211 12 UFGT (124) View species results
Rosmarinic acid pathway 122 7 C4H (55) View species results
Steroid pathway 70 10 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1177 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 234 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Cnucscaffold12630037390 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Cnucscaffold1729820073210 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
Cnucscaffold201280090230 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Cnucscaffold259290121730 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Cnucscaffold29990136110 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
Cnucscaffold313130141210 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Cnucscaffold34670152720 Terpenoid FPPS low borderline FPPS__00008__sp_Q4JHN6_FPS_PANGI
Cnucscaffold48040193760 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
Cnucscaffold718190241220 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC