Cocos nucifera (cocos_nucifera)
Imported from atlas release summary for Cocos nucifera.
1334
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1334
Candidate Genes
C4H
6.08%
C3'H/CYP98A
5.83%
BAHD
5.73%
UGT
4.6%
4CL
4.35%
POD
4.19%
7DLGT
4.16%
UFGT
4.16%
Other Families
60.9%
More Families (96)
IFS
126
3.97%
CYP76
109
3.43%
T3O
108
3.4%
F3H
75
2.36%
DWF4/CYP90B1
75
2.36%
NMT
62
1.95%
STR
55
1.73%
BR6OX2/CYP85A2
52
1.64%
F3'H/CYP75B
51
1.61%
SMT1/SMT2/SMT3
50
1.58%
CODM/T6ODM
46
1.45%
CYP71
46
1.45%
H6H
41
1.29%
IFR
36
1.13%
CAD
36
1.13%
PYKS
35
1.1%
LAC
35
1.1%
T16H
34
1.07%
TRI/TRII
31
0.98%
CSE
31
0.98%
PMT
30
0.95%
GS
28
0.88%
FNS
27
0.85%
HCT
27
0.85%
CYP90D1
27
0.85%
G8O/G8H
26
0.82%
RAS
25
0.79%
ANR
22
0.69%
CCR
22
0.69%
COMT
22
0.69%
CAS
22
0.69%
PAL
21
0.66%
TPS
19
0.6%
16OMT
18
0.57%
CYP51G1
18
0.57%
GES
17
0.54%
SLS
17
0.54%
F5H/CYP84A
17
0.54%
BR6OX1/CYP85A1
17
0.54%
COR
16
0.5%
SGD
16
0.5%
IO
16
0.5%
F3'5'H/CYP75A
16
0.5%
8HGO
15
0.47%
TAT
15
0.47%
NCS
14
0.44%
CNMT
13
0.41%
CHS
13
0.41%
CPD/CYP90A1
13
0.41%
DFR
12
0.38%
CYP719
10
0.32%
BBE
10
0.32%
CYP80B1
9
0.28%
ANS/LDOX
9
0.28%
CPR
9
0.28%
GGPPS
9
0.28%
AACT
9
0.28%
FPPS
9
0.28%
7DLH
8
0.25%
HPPR
8
0.25%
CHI
7
0.22%
SQS/FDFT1
7
0.22%
SMO1/SMO2
7
0.22%
MPO
6
0.19%
LAMT
6
0.19%
FLS
6
0.19%
CCoAOMT
6
0.19%
DXS
6
0.19%
TYDC_DDC
5
0.16%
ISY
5
0.16%
DET2
5
0.16%
HMGR
5
0.16%
TDC
4
0.13%
ADC
4
0.13%
MVK
4
0.13%
ODC
3
0.09%
ROT3/CYP90C1
3
0.09%
DWF1
3
0.09%
SQE
3
0.09%
MVD
3
0.09%
CMK/IspE
3
0.09%
MCT/IspD
3
0.09%
HMGS
3
0.09%
XMT_MXMT_DXMT
2
0.06%
DWF5
2
0.06%
DWF7
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
DXR
2
0.06%
HDS/IspG
2
0.06%
MDS/IspF
2
0.06%
CYP80F1
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
FK
1
0.03%
HYD1
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 374 | 18 | BAHD (143) | View species results |
| Alkaloid pathway | 280 | 20 | 7DLGT (73) | View species results |
| Phenylpropanoid pathway | 277 | 13 | POD (118) | View species results |
| Flavonoid pathway | 211 | 12 | UFGT (124) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (55) | View species results |
| Steroid pathway | 70 | 10 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1177 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 234 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cnucscaffold101250009420 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold144130052590 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold15960065240 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold160140065940 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold16640069050 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold179710077170 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold18530080310 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Cnucscaffold28420131020 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold30870139930 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold30870139940 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold31910143570 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold31910143580 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold53410203300 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Cnucscaffold57980216860 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Cnucscaffold78560253360 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Cnucscaffold78560253380 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Cnucscaffold85980264540 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |