Cocos nucifera (cocos_nucifera)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.04% Alkaloid pathway 20.99% Phenylpropanoid pathway 20.76% Flavonoid pathway 15.82% Rosmarinic acid pathway 9.15% Steroid pathway 5.25%

Family Distribution

1334 Candidate Genes

C4H 6.08% C3'H/CYP98A 5.83% BAHD 5.73% UGT 4.6% 4CL 4.35% POD 4.19% 7DLGT 4.16% UFGT 4.16%

Other Families 60.9%

More Families (96)

IFS 126 3.97% CYP76 109 3.43% T3O 108 3.4% F3H 75 2.36% DWF4/CYP90B1 75 2.36% NMT 62 1.95% STR 55 1.73% BR6OX2/CYP85A2 52 1.64% F3'H/CYP75B 51 1.61% SMT1/SMT2/SMT3 50 1.58% CODM/T6ODM 46 1.45% CYP71 46 1.45% H6H 41 1.29% IFR 36 1.13% CAD 36 1.13% PYKS 35 1.1% LAC 35 1.1% T16H 34 1.07% TRI/TRII 31 0.98% CSE 31 0.98% PMT 30 0.95% GS 28 0.88% FNS 27 0.85% HCT 27 0.85% CYP90D1 27 0.85% G8O/G8H 26 0.82% RAS 25 0.79% ANR 22 0.69% CCR 22 0.69% COMT 22 0.69% CAS 22 0.69% PAL 21 0.66% TPS 19 0.6% 16OMT 18 0.57% CYP51G1 18 0.57% GES 17 0.54% SLS 17 0.54% F5H/CYP84A 17 0.54% BR6OX1/CYP85A1 17 0.54% COR 16 0.5% SGD 16 0.5% IO 16 0.5% F3'5'H/CYP75A 16 0.5% 8HGO 15 0.47% TAT 15 0.47% NCS 14 0.44% CNMT 13 0.41% CHS 13 0.41% CPD/CYP90A1 13 0.41% DFR 12 0.38% CYP719 10 0.32% BBE 10 0.32% CYP80B1 9 0.28% ANS/LDOX 9 0.28% CPR 9 0.28% GGPPS 9 0.28% AACT 9 0.28% FPPS 9 0.28% 7DLH 8 0.25% HPPR 8 0.25% CHI 7 0.22% SQS/FDFT1 7 0.22% SMO1/SMO2 7 0.22% MPO 6 0.19% LAMT 6 0.19% FLS 6 0.19% CCoAOMT 6 0.19% DXS 6 0.19% TYDC_DDC 5 0.16% ISY 5 0.16% DET2 5 0.16% HMGR 5 0.16% TDC 4 0.13% ADC 4 0.13% MVK 4 0.13% ODC 3 0.09% ROT3/CYP90C1 3 0.09% DWF1 3 0.09% SQE 3 0.09% MVD 3 0.09% CMK/IspE 3 0.09% MCT/IspD 3 0.09% HMGS 3 0.09% XMT_MXMT_DXMT 2 0.06% DWF5 2 0.06% DWF7 2 0.06% IDI 2 0.06% PMK 2 0.06% DXR 2 0.06% HDS/IspG 2 0.06% MDS/IspF 2 0.06% CYP80F1 1 0.03% 6OMT_4OMT_SOMT 1 0.03% FK 1 0.03% HYD1 1 0.03% HDR/IspH 1 0.03%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	374	18	BAHD (143)	View species results
Alkaloid pathway	280	20	7DLGT (73)	View species results
Phenylpropanoid pathway	277	13	POD (118)	View species results
Flavonoid pathway	211	12	UFGT (124)	View species results
Rosmarinic acid pathway	122	7	C4H (55)	View species results
Steroid pathway	70	10	SMT1/SMT2/SMT3 (32)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1177	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	234	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
Cnucscaffold105330014980	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Cnucscaffold107120017900	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Cnucscaffold107130017980	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cnucscaffold107130017990	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cnucscaffold10780018230	Alkaloid	NMT	low	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Cnucscaffold108360018950	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH
Cnucscaffold11080020990	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
Cnucscaffold115820027730	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Cnucscaffold131140040710	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Cnucscaffold14070050420	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Cnucscaffold142450051900	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Cnucscaffold15480061770	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Cnucscaffold15690062760	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cnucscaffold173970073530	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Cnucscaffold17400073990	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Cnucscaffold17870076550	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Cnucscaffold18530080290	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
Cnucscaffold19650085800	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Cnucscaffold202240090560	Alkaloid	NMT	medium	pass	NMT__00024__sp_P0CB22_ATX2_ARATH
Cnucscaffold20570093910	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
Cnucscaffold218390099840	Alkaloid	NMT	low	borderline	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Cnucscaffold23080108340	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Cnucscaffold233450110620	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
Cnucscaffold24680115830	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
Cnucscaffold26650123540	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Cnucscaffold26760123830	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
Cnucscaffold30250138240	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH
Cnucscaffold31830143110	Alkaloid	NMT	medium	pass	NMT__00018__sp_I1M2U5_NAMT1_SOYBN
Cnucscaffold32770146300	Alkaloid	NMT	medium	pass	NMT__00066__sp_Q9SU94_ANM11_ARATH
Cnucscaffold34100150340	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cnucscaffold34670152360	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cnucscaffold35610156010	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Cnucscaffold36160157120	Alkaloid	NMT	medium	borderline	NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Cnucscaffold36290157610	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cnucscaffold38570166530	Alkaloid	NMT	medium	pass	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cnucscaffold38690167450	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cnucscaffold38950168120	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Cnucscaffold38950168130	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Cnucscaffold4070172680	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cnucscaffold40850173500	Alkaloid	NMT	low	borderline	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Cnucscaffold43510182460	Alkaloid	NMT	medium	pass	NMT__00034__sp_Q5VN06_CLF_ORYSJ
Cnucscaffold4670190940	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cnucscaffold47010192150	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
Cnucscaffold4880195440	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cnucscaffold51070198950	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cnucscaffold5340203280	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Cnucscaffold5410204930	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cnucscaffold545900206810	Alkaloid	NMT	low	borderline	NMT__00030__sp_Q43088_RBCMT_PEA
Cnucscaffold56360212350	Alkaloid	NMT	low	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
Cnucscaffold5870218910	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH