Cocos nucifera (cocos_nucifera)
Imported from atlas release summary for Cocos nucifera.
1334
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1334
Candidate Genes
C4H
6.08%
C3'H/CYP98A
5.83%
BAHD
5.73%
UGT
4.6%
4CL
4.35%
POD
4.19%
7DLGT
4.16%
UFGT
4.16%
Other Families
60.9%
More Families (96)
IFS
126
3.97%
CYP76
109
3.43%
T3O
108
3.4%
F3H
75
2.36%
DWF4/CYP90B1
75
2.36%
NMT
62
1.95%
STR
55
1.73%
BR6OX2/CYP85A2
52
1.64%
F3'H/CYP75B
51
1.61%
SMT1/SMT2/SMT3
50
1.58%
CODM/T6ODM
46
1.45%
CYP71
46
1.45%
H6H
41
1.29%
IFR
36
1.13%
CAD
36
1.13%
PYKS
35
1.1%
LAC
35
1.1%
T16H
34
1.07%
TRI/TRII
31
0.98%
CSE
31
0.98%
PMT
30
0.95%
GS
28
0.88%
FNS
27
0.85%
HCT
27
0.85%
CYP90D1
27
0.85%
G8O/G8H
26
0.82%
RAS
25
0.79%
ANR
22
0.69%
CCR
22
0.69%
COMT
22
0.69%
CAS
22
0.69%
PAL
21
0.66%
TPS
19
0.6%
16OMT
18
0.57%
CYP51G1
18
0.57%
GES
17
0.54%
SLS
17
0.54%
F5H/CYP84A
17
0.54%
BR6OX1/CYP85A1
17
0.54%
COR
16
0.5%
SGD
16
0.5%
IO
16
0.5%
F3'5'H/CYP75A
16
0.5%
8HGO
15
0.47%
TAT
15
0.47%
NCS
14
0.44%
CNMT
13
0.41%
CHS
13
0.41%
CPD/CYP90A1
13
0.41%
DFR
12
0.38%
CYP719
10
0.32%
BBE
10
0.32%
CYP80B1
9
0.28%
ANS/LDOX
9
0.28%
CPR
9
0.28%
GGPPS
9
0.28%
AACT
9
0.28%
FPPS
9
0.28%
7DLH
8
0.25%
HPPR
8
0.25%
CHI
7
0.22%
SQS/FDFT1
7
0.22%
SMO1/SMO2
7
0.22%
MPO
6
0.19%
LAMT
6
0.19%
FLS
6
0.19%
CCoAOMT
6
0.19%
DXS
6
0.19%
TYDC_DDC
5
0.16%
ISY
5
0.16%
DET2
5
0.16%
HMGR
5
0.16%
TDC
4
0.13%
ADC
4
0.13%
MVK
4
0.13%
ODC
3
0.09%
ROT3/CYP90C1
3
0.09%
DWF1
3
0.09%
SQE
3
0.09%
MVD
3
0.09%
CMK/IspE
3
0.09%
MCT/IspD
3
0.09%
HMGS
3
0.09%
XMT_MXMT_DXMT
2
0.06%
DWF5
2
0.06%
DWF7
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
DXR
2
0.06%
HDS/IspG
2
0.06%
MDS/IspF
2
0.06%
CYP80F1
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
FK
1
0.03%
HYD1
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 374 | 18 | BAHD (143) | View species results |
| Alkaloid pathway | 280 | 20 | 7DLGT (73) | View species results |
| Phenylpropanoid pathway | 277 | 13 | POD (118) | View species results |
| Flavonoid pathway | 211 | 12 | UFGT (124) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (55) | View species results |
| Steroid pathway | 70 | 10 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1177 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 234 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cnucscaffold223020103660 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Cnucscaffold23130108860 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Cnucscaffold232110109110 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold232110109120 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold23240109710 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Cnucscaffold23420110940 | Phenylpropanoid | POD | low | borderline | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Cnucscaffold25280118710 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold25280118720 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold25280118730 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold25510120380 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Cnucscaffold28670131720 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Cnucscaffold29860135690 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Cnucscaffold30160136840 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold3090140260 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Cnucscaffold30930140440 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Cnucscaffold31350141270 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Cnucscaffold3270145780 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Cnucscaffold32830146560 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| Cnucscaffold338890149620 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Cnucscaffold344680151580 | Phenylpropanoid | POD | low | borderline | POD__00006__sp_O22850_GPX3_ARATH |
| Cnucscaffold34670152050 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Cnucscaffold35230154500 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Cnucscaffold35480155720 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold35480155740 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold35940156380 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Cnucscaffold37200161350 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold37200161660 | Phenylpropanoid | POD | medium | pass | POD__00020__sp_Q9FE01_APX2_ORYSJ |
| Cnucscaffold37690163050 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Cnucscaffold39960171100 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Cnucscaffold4030172090 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Cnucscaffold41820175700 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Cnucscaffold43180180390 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Cnucscaffold4340181750 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Cnucscaffold435990182610 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold435990182620 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold44380185730 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold44380185740 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold44640186690 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Cnucscaffold4670190960 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Cnucscaffold4670190970 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Cnucscaffold48210194350 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Cnucscaffold48210194360 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Cnucscaffold50270197880 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold50270197890 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold5410205070 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| Cnucscaffold5410205080 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| Cnucscaffold55150207660 | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| Cnucscaffold55450209650 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| Cnucscaffold55450210340 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Cnucscaffold55450210350 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |