PlantSME Plant secondary metabolism enzyme database

Cocos nucifera (cocos_nucifera)

Imported from atlas release summary for Cocos nucifera.

1540
Candidate Protein Records
1334
Pathway-Level Records
3174
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 374 18 BAHD (143) View species results
Alkaloid pathway 280 20 7DLGT (73) View species results
Phenylpropanoid pathway 277 13 POD (118) View species results
Flavonoid pathway 211 12 UFGT (124) View species results
Rosmarinic acid pathway 122 7 C4H (55) View species results
Steroid pathway 70 10 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1177 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 234 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cnucscaffold79700256130 Alkaloid NMT medium pass
Cnucscaffold90130269400 Alkaloid NMT medium pass
Cnucscaffold9950279860 Alkaloid NMT medium borderline
Cnucscaffold9950279900 Alkaloid NMT medium borderline
Cnucscaffold19650087060 Alkaloid ODC medium pass
Cnucscaffold19650087070 Alkaloid ODC medium pass
Cnucscaffold58620217780 Alkaloid ODC medium pass
Cnucscaffold10110009210 Alkaloid PMT medium pass
Cnucscaffold102300010350 Alkaloid PMT medium pass
Cnucscaffold11480026240 Alkaloid PMT low borderline
Cnucscaffold11480026250 Alkaloid PMT low borderline
Cnucscaffold116700028090 Alkaloid PMT medium pass
Cnucscaffold128330038260 Alkaloid PMT medium pass
Cnucscaffold130910040650 Alkaloid PMT medium borderline
Cnucscaffold13560044470 Alkaloid PMT medium borderline
Cnucscaffold158920064290 Alkaloid PMT low borderline
Cnucscaffold15960064730 Alkaloid PMT medium pass
Cnucscaffold15960064740 Alkaloid PMT medium pass
Cnucscaffold20520092070 Alkaloid PMT low borderline
Cnucscaffold225850106760 Alkaloid PMT medium pass
Cnucscaffold25240117990 Alkaloid PMT medium pass
Cnucscaffold38570166510 Alkaloid PMT medium borderline
Cnucscaffold39590169580 Alkaloid PMT medium pass
Cnucscaffold498530197610 Alkaloid PMT medium pass
Cnucscaffold55070207600 Alkaloid PMT medium pass
Cnucscaffold57230215760 Alkaloid PMT medium pass
Cnucscaffold5950219840 Alkaloid PMT medium pass
Cnucscaffold5950219850 Alkaloid PMT medium pass
Cnucscaffold5950219860 Alkaloid PMT medium pass
Cnucscaffold5950219870 Alkaloid PMT medium pass
Cnucscaffold59810221330 Alkaloid PMT medium pass
Cnucscaffold59810221340 Alkaloid PMT medium pass
Cnucscaffold60930223350 Alkaloid PMT medium pass
Cnucscaffold642330227920 Alkaloid PMT medium borderline
Cnucscaffold81390258840 Alkaloid PMT low borderline
Cnucscaffold90790269930 Alkaloid PMT medium pass
Cnucscaffold90790269940 Alkaloid PMT medium pass
Cnucscaffold10630015810 Alkaloid PYKS high pass
Cnucscaffold108360018880 Alkaloid PYKS medium pass
Cnucscaffold115630027520 Alkaloid PYKS low borderline
Cnucscaffold118200029530 Alkaloid PYKS low borderline
Cnucscaffold121650032890 Alkaloid PYKS low borderline
Cnucscaffold135350044360 Alkaloid PYKS low borderline
Cnucscaffold136330047690 Alkaloid PYKS low borderline
Cnucscaffold13790048310 Alkaloid PYKS low borderline
Cnucscaffold15960065130 Alkaloid PYKS low borderline
Cnucscaffold18680080890 Alkaloid PYKS high pass
Cnucscaffold208350095810 Alkaloid PYKS low borderline
Cnucscaffold22390104580 Alkaloid PYKS high pass
Cnucscaffold226360106930 Alkaloid PYKS high pass