Cocos nucifera (cocos_nucifera)
Imported from atlas release summary for Cocos nucifera.
1540
Candidate Protein Records
1334
Pathway-Level Records
3174
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3174
Family-Level Calls
C4H
6.08%
C3'H/CYP98A
5.83%
BAHD
5.73%
UGT
4.6%
4CL
4.35%
POD
4.19%
7DLGT
4.16%
UFGT
4.16%
Other Families
60.9%
More Families (96)
IFS
126
3.97%
CYP76
109
3.43%
T3O
108
3.4%
F3H
75
2.36%
DWF4/CYP90B1
75
2.36%
NMT
62
1.95%
STR
55
1.73%
BR6OX2/CYP85A2
52
1.64%
F3'H/CYP75B
51
1.61%
SMT1/SMT2/SMT3
50
1.58%
CODM/T6ODM
46
1.45%
CYP71
46
1.45%
H6H
41
1.29%
IFR
36
1.13%
CAD
36
1.13%
PYKS
35
1.1%
LAC
35
1.1%
T16H
34
1.07%
TRI/TRII
31
0.98%
CSE
31
0.98%
PMT
30
0.95%
GS
28
0.88%
FNS
27
0.85%
HCT
27
0.85%
CYP90D1
27
0.85%
G8O/G8H
26
0.82%
RAS
25
0.79%
ANR
22
0.69%
CCR
22
0.69%
COMT
22
0.69%
CAS
22
0.69%
PAL
21
0.66%
TPS
19
0.6%
16OMT
18
0.57%
CYP51G1
18
0.57%
GES
17
0.54%
SLS
17
0.54%
F5H/CYP84A
17
0.54%
BR6OX1/CYP85A1
17
0.54%
COR
16
0.5%
SGD
16
0.5%
IO
16
0.5%
F3'5'H/CYP75A
16
0.5%
8HGO
15
0.47%
TAT
15
0.47%
NCS
14
0.44%
CNMT
13
0.41%
CHS
13
0.41%
CPD/CYP90A1
13
0.41%
DFR
12
0.38%
CYP719
10
0.32%
BBE
10
0.32%
CYP80B1
9
0.28%
ANS/LDOX
9
0.28%
CPR
9
0.28%
GGPPS
9
0.28%
AACT
9
0.28%
FPPS
9
0.28%
7DLH
8
0.25%
HPPR
8
0.25%
CHI
7
0.22%
SQS/FDFT1
7
0.22%
SMO1/SMO2
7
0.22%
MPO
6
0.19%
LAMT
6
0.19%
FLS
6
0.19%
CCoAOMT
6
0.19%
DXS
6
0.19%
TYDC_DDC
5
0.16%
ISY
5
0.16%
DET2
5
0.16%
HMGR
5
0.16%
TDC
4
0.13%
ADC
4
0.13%
MVK
4
0.13%
ODC
3
0.09%
ROT3/CYP90C1
3
0.09%
DWF1
3
0.09%
SQE
3
0.09%
MVD
3
0.09%
CMK/IspE
3
0.09%
MCT/IspD
3
0.09%
HMGS
3
0.09%
XMT_MXMT_DXMT
2
0.06%
DWF5
2
0.06%
DWF7
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
DXR
2
0.06%
HDS/IspG
2
0.06%
MDS/IspF
2
0.06%
CYP80F1
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
FK
1
0.03%
HYD1
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 374 | 18 | BAHD (143) | View species results |
| Alkaloid pathway | 280 | 20 | 7DLGT (73) | View species results |
| Phenylpropanoid pathway | 277 | 13 | POD (118) | View species results |
| Flavonoid pathway | 211 | 12 | UFGT (124) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (55) | View species results |
| Steroid pathway | 70 | 10 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1177 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 234 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cnucscaffold4650189990 | Rosmarinic Acid | 4CL | low | borderline |
| Cnucscaffold52350200970 | Rosmarinic Acid | 4CL | low | borderline |
| Cnucscaffold5670213080 | Rosmarinic Acid | 4CL | medium | pass |
| Cnucscaffold58660218810 | Rosmarinic Acid | 4CL | medium | pass |
| Cnucscaffold59890221860 | Rosmarinic Acid | 4CL | low | borderline |
| Cnucscaffold64590228570 | Rosmarinic Acid | 4CL | medium | pass |
| Cnucscaffold75740249890 | Rosmarinic Acid | 4CL | medium | pass |
| Cnucscaffold75740249900 | Rosmarinic Acid | 4CL | medium | pass |
| Cnucscaffold75740249910 | Rosmarinic Acid | 4CL | medium | pass |
| Cnucscaffold75740249920 | Rosmarinic Acid | 4CL | medium | pass |
| Cnucscaffold9610276850 | Rosmarinic Acid | 4CL | medium | pass |
| CnucC690574960000970 | Rosmarinic Acid | C4H | medium | pass |
| CnucC692600440002590 | Rosmarinic Acid | C4H | medium | pass |
| CnucC693739650004030 | Rosmarinic Acid | C4H | low | borderline |
| CnucC694063410004640 | Rosmarinic Acid | C4H | low | borderline |
| CnucC694468380005340 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold101250009420 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold101360009650 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold101360009660 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold101360009670 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold102900010950 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold103270011620 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold103850012430 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold103850012450 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold10490013490 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold10490013960 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold105680015230 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold105770015260 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold105770015270 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold105770015290 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold105770015340 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold106940016700 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold106940016710 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold1130023400 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold1130023870 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold1130023880 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold1130023890 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold1130023930 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold1130024120 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold116700028110 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold116700028130 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold116700028280 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold116700028310 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold120660031640 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold1360045040 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold138360048470 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold13930049080 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold13930049090 | Rosmarinic Acid | C4H | medium | pass |
| Cnucscaffold14150051120 | Rosmarinic Acid | C4H | low | borderline |
| Cnucscaffold144130052590 | Rosmarinic Acid | C4H | low | borderline |