PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GtomD04G0023390.1 Phenylpropanoid C4H/CYP73A medium borderline
GtomD04G0023400.1 Phenylpropanoid C4H/CYP73A medium borderline
GtomD05G0021840.1 Phenylpropanoid C4H/CYP73A low borderline
GtomD06G0001840.1 Phenylpropanoid C4H/CYP73A low borderline
GtomD07G0009200.1 Phenylpropanoid C4H/CYP73A low borderline
GtomD08G0022160.1 Phenylpropanoid C4H/CYP73A low borderline
GtomD09G0022400.1 Phenylpropanoid C4H/CYP73A low borderline
GtomD09G0022400.2 Phenylpropanoid C4H/CYP73A low borderline
GtomD09G0023020.1 Phenylpropanoid C4H/CYP73A low borderline
GtomD10G0025020.1 Phenylpropanoid C4H/CYP73A medium borderline
GtomD11G0037850.1 Phenylpropanoid C4H/CYP73A medium borderline
GtomD13G0004160.1 Phenylpropanoid C4H/CYP73A medium borderline
GtomD13G0007400.1 Phenylpropanoid C4H/CYP73A medium borderline
GtomD13G0007400.2 Phenylpropanoid C4H/CYP73A low borderline
GtomD13G0010150.1 Phenylpropanoid C4H/CYP73A medium borderline
GtomD13G0010180.1 Phenylpropanoid C4H/CYP73A medium borderline
Gtomscaffold_2600001220.1 Phenylpropanoid C4H/CYP73A medium borderline
Gtomscaffold_2600001230.1 Phenylpropanoid C4H/CYP73A medium borderline
Gtomscaffold_2600001240.1 Phenylpropanoid C4H/CYP73A medium borderline
Gtomscaffold_2600001240.2 Phenylpropanoid C4H/CYP73A medium borderline
GtomA01G0008770.1 Phenylpropanoid CAD medium borderline
GtomA01G0008770.2 Phenylpropanoid CAD medium borderline
GtomA01G0008770.3 Phenylpropanoid CAD medium borderline
GtomA01G0022500.1 Phenylpropanoid CAD low borderline
GtomA02G0008120.1 Phenylpropanoid CAD low borderline
GtomA02G0008170.1 Phenylpropanoid CAD low borderline
GtomA02G0015590.1 Phenylpropanoid CAD medium borderline
GtomA02G0016740.1 Phenylpropanoid CAD medium pass
GtomA02G0016740.2 Phenylpropanoid CAD medium pass
GtomA02G0017290.1 Phenylpropanoid CAD medium borderline
GtomA02G0017760.1 Phenylpropanoid CAD medium pass
GtomA03G0016760.1 Phenylpropanoid CAD low borderline
GtomA03G0022160.1 Phenylpropanoid CAD medium pass
GtomA04G0003020.1 Phenylpropanoid CAD low borderline
GtomA04G0003900.1 Phenylpropanoid CAD low borderline
GtomA04G0006490.1 Phenylpropanoid CAD low borderline
GtomA04G0006500.1 Phenylpropanoid CAD low borderline
GtomA04G0008450.1 Phenylpropanoid CAD low borderline
GtomA04G0008450.2 Phenylpropanoid CAD low borderline
GtomA04G0014250.1 Phenylpropanoid CAD low borderline
GtomA05G0007550.1 Phenylpropanoid CAD medium borderline
GtomA05G0017710.1 Phenylpropanoid CAD low borderline
GtomA05G0018170.1 Phenylpropanoid CAD medium borderline
GtomA05G0019950.1 Phenylpropanoid CAD medium pass
GtomA05G0032060.1 Phenylpropanoid CAD low borderline
GtomA05G0032070.1 Phenylpropanoid CAD low borderline
GtomA06G0000960.1 Phenylpropanoid CAD medium borderline
GtomA06G0004000.1 Phenylpropanoid CAD low borderline
GtomA07G0014360.1 Phenylpropanoid CAD medium borderline
GtomA07G0014370.1 Phenylpropanoid CAD medium borderline