PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

4696
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CNMT
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Gene Pathway Family Confidence Status
GtomA01G0020680.1 Alkaloid CNMT low borderline
GtomA01G0020720.1 Alkaloid CNMT low borderline
GtomA02G0005100.1 Alkaloid CNMT medium pass
GtomA02G0005110.1 Alkaloid CNMT medium pass
GtomA02G0020310.1 Alkaloid CNMT low borderline
GtomA04G0015720.1 Alkaloid CNMT low borderline
GtomA05G0004380.1 Alkaloid CNMT medium borderline
GtomA05G0004390.1 Alkaloid CNMT medium borderline
GtomA05G0004390.2 Alkaloid CNMT medium borderline
GtomA05G0004410.1 Alkaloid CNMT medium borderline
GtomA05G0004410.2 Alkaloid CNMT medium borderline
GtomA05G0045740.1 Alkaloid CNMT low borderline
GtomA05G0045740.2 Alkaloid CNMT low borderline
GtomA07G0005510.1 Alkaloid CNMT low borderline
GtomA07G0008740.1 Alkaloid CNMT low borderline
GtomA09G0019340.1 Alkaloid CNMT low borderline
GtomA10G0019090.1 Alkaloid CNMT medium pass
GtomA11G0018990.1 Alkaloid CNMT low borderline
GtomA13G0008880.1 Alkaloid CNMT low borderline
GtomA13G0008880.2 Alkaloid CNMT low borderline
GtomD01G0021600.1 Alkaloid CNMT low borderline
GtomD01G0021600.2 Alkaloid CNMT low borderline
GtomD01G0021600.3 Alkaloid CNMT low borderline
GtomD01G0021600.4 Alkaloid CNMT low borderline
GtomD01G0021640.1 Alkaloid CNMT low borderline
GtomD02G0006280.1 Alkaloid CNMT medium pass
GtomD02G0006300.1 Alkaloid CNMT medium pass
GtomD03G0001200.1 Alkaloid CNMT low borderline
GtomD04G0001190.1 Alkaloid CNMT low borderline
GtomD04G0019500.1 Alkaloid CNMT low borderline
GtomD04G0019500.2 Alkaloid CNMT low borderline
GtomD05G0004530.1 Alkaloid CNMT medium borderline
GtomD05G0029620.4 Alkaloid CNMT low borderline
GtomD05G0029620.5 Alkaloid CNMT low borderline
GtomD05G0029620.6 Alkaloid CNMT low borderline
GtomD07G0005710.1 Alkaloid CNMT low borderline
GtomD07G0008780.1 Alkaloid CNMT low borderline
GtomD09G0019250.1 Alkaloid CNMT low borderline
GtomD09G0019250.2 Alkaloid CNMT low borderline
GtomD09G0019250.3 Alkaloid CNMT low borderline
GtomD10G0009840.1 Alkaloid CNMT medium pass
GtomD11G0019050.1 Alkaloid CNMT low borderline
GtomD11G0019050.2 Alkaloid CNMT low borderline