PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GtomD13G0001550.1 Alkaloid TRI/TRII medium pass
GtomD13G0004310.1 Alkaloid TRI/TRII low borderline
GtomD13G0011220.1 Alkaloid TRI/TRII low borderline
GtomD13G0011690.1 Alkaloid TRI/TRII medium pass
GtomD13G0027710.1 Alkaloid TRI/TRII medium pass
GtomD13G0027720.1 Alkaloid TRI/TRII medium pass
GtomD13G0029240.1 Alkaloid TRI/TRII medium pass
GtomD13G0029250.1 Alkaloid TRI/TRII medium pass
GtomA01G0001930.1 Alkaloid TYDC_DDC medium borderline
GtomA01G0001940.1 Alkaloid TYDC_DDC medium borderline
GtomA01G0001960.1 Alkaloid TYDC_DDC medium borderline
GtomA05G0007740.1 Alkaloid TYDC_DDC low borderline
GtomA05G0007740.2 Alkaloid TYDC_DDC low borderline
GtomA07G0008350.1 Alkaloid TYDC_DDC medium borderline
GtomA07G0017770.1 Alkaloid TYDC_DDC medium borderline
GtomA07G0017770.2 Alkaloid TYDC_DDC medium borderline
GtomA07G0017770.5 Alkaloid TYDC_DDC medium borderline
GtomA07G0017770.6 Alkaloid TYDC_DDC medium borderline
GtomA10G0010140.2 Alkaloid TYDC_DDC low borderline
GtomA13G0020040.1 Alkaloid TYDC_DDC medium borderline
GtomA13G0020060.1 Alkaloid TYDC_DDC medium borderline
GtomD01G0001840.1 Alkaloid TYDC_DDC medium borderline
GtomD07G0008400.1 Alkaloid TYDC_DDC medium borderline
GtomD07G0018150.1 Alkaloid TYDC_DDC medium borderline
GtomD10G0022820.1 Alkaloid TYDC_DDC medium borderline
GtomD10G0022840.1 Alkaloid TYDC_DDC medium borderline
GtomD13G0020860.1 Alkaloid TYDC_DDC medium borderline
GtomD13G0020910.1 Alkaloid TYDC_DDC medium borderline
GtomA09G0003670.1 Alkaloid XMT_MXMT_DXMT medium borderline
GtomD07G0015780.1 Alkaloid XMT_MXMT_DXMT low borderline
GtomD10G0022530.1 Alkaloid XMT_MXMT_DXMT medium borderline
GtomA01G0003290.1 Flavonoid 4CL low borderline
GtomA01G0003300.1 Flavonoid 4CL low borderline
GtomA01G0003300.2 Flavonoid 4CL low borderline
GtomA01G0012690.1 Flavonoid 4CL medium pass
GtomA01G0021560.1 Flavonoid 4CL low borderline
GtomA01G0021560.2 Flavonoid 4CL low borderline
GtomA02G0006360.1 Flavonoid 4CL medium pass
GtomA02G0006380.1 Flavonoid 4CL medium pass
GtomA02G0006390.1 Flavonoid 4CL medium pass
GtomA02G0010920.1 Flavonoid 4CL medium pass
GtomA02G0010970.1 Flavonoid 4CL medium pass
GtomA02G0012220.1 Flavonoid 4CL low borderline
GtomA02G0013040.1 Flavonoid 4CL medium pass
GtomA02G0013210.1 Flavonoid 4CL medium pass
GtomA02G0017080.1 Flavonoid 4CL medium pass
GtomA02G0021130.1 Flavonoid 4CL medium pass
GtomA02G0021170.1 Flavonoid 4CL medium pass
GtomA03G0000140.1 Flavonoid 4CL medium pass
GtomA03G0004330.1 Flavonoid 4CL medium pass