PlantSME Plant secondary metabolism enzyme database

Hippophae rhamnoides (hippophae_rhamnoides)

Imported from atlas release summary for Hippophae rhamnoides.

1269
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.39% Phenylpropanoid pathway 24.03% Alkaloid pathway 20.02% Flavonoid pathway 12.21% Rosmarinic acid pathway 8.43% Steroid pathway 5.91%
Family Distribution
BAHD 6.04% C4H 5.59% C3'H/CYP98A 5.4% POD 4.8% 4CL 4.0% UGT 3.53% CYP76 3.46% 7DLGT 3.21%
Other Families 63.98%
More Families (96)
F3H 101 3.21% IFS 101 3.21% UFGT 96 3.05% NMT 87 2.76% T3O 82 2.6% CODM/T6ODM 67 2.13% DWF4/CYP90B1 66 2.1% STR 58 1.84% H6H 55 1.75% BR6OX2/CYP85A2 52 1.65% CAD 50 1.59% F3'H/CYP75B 49 1.56% LAC 48 1.52% SMT1/SMT2/SMT3 42 1.33% TPS 42 1.33% TRI/TRII 41 1.3% CYP71 40 1.27% IFR 39 1.24% CSE 39 1.24% HCT 37 1.18% CAS 35 1.11% GES 34 1.08% 7DLH 28 0.89% PYKS 27 0.86% F3'5'H/CYP75A 27 0.86% COMT 27 0.86% T16H 26 0.83% CYP90D1 26 0.83% G8O/G8H 24 0.76% IO 23 0.73% PMT 23 0.73% RAS 23 0.73% TAT 23 0.73% GS 21 0.67% CCR 21 0.67% ANR 19 0.6% F5H/CYP84A 19 0.6% SGD 18 0.57% 16OMT 17 0.54% FNS 17 0.54% BBE 16 0.51% LAMT 15 0.48% PAL 15 0.48% CYP51G1 15 0.48% ANS/LDOX 14 0.44% CPD/CYP90A1 14 0.44% BR6OX1/CYP85A1 14 0.44% NCS 13 0.41% DFR 13 0.41% SLS 12 0.38% CNMT 11 0.35% ROT3/CYP90C1 10 0.32% CHS 9 0.29% CCoAOMT 9 0.29% 8HGO 8 0.25% MPO 8 0.25% CPR 8 0.25% SQE 8 0.25% DXS 8 0.25% COR 7 0.22% ISY 7 0.22% SQS/FDFT1 7 0.22% GGPPS 7 0.22% HPPR 6 0.19% DET2 6 0.19% AACT 6 0.19% CYP80B1 5 0.16% TYDC_DDC 5 0.16% HMGR 5 0.16% FPPS 5 0.16% MVK 5 0.16% CYP719 4 0.13% SMO1/SMO2 4 0.13% MVD 4 0.13% PMK 4 0.13% ADC 3 0.1% CHI 3 0.1% DWF7 3 0.1% HMGS 3 0.1% 6OMT_4OMT_SOMT 2 0.06% DWF1 2 0.06% MDS/IspF 2 0.06% HDS/IspG 2 0.06% IDI 2 0.06% CMK/IspE 2 0.06% MCT/IspD 2 0.06% HDR/IspH 2 0.06% XMT_MXMT_DXMT 1 0.03% ODC 1 0.03% TDC 1 0.03% CPI1 1 0.03% HYD1 1 0.03% FK 1 0.03% DWF5 1 0.03% GPPS 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 373 19 BAHD (149) View species results
Phenylpropanoid pathway 305 12 POD (142) View species results
Alkaloid pathway 254 20 NMT (52) View species results
Flavonoid pathway 155 10 UFGT (87) View species results
Rosmarinic acid pathway 107 7 C4H (40) View species results
Steroid pathway 75 14 CAS (27) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1092 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 250 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ISY
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Gene Pathway Family Confidence Status
hippophae_rhamnoides_Hiprha1gene10027 Alkaloid ISY medium pass
hippophae_rhamnoides_Hiprha1gene22272 Alkaloid ISY low borderline
hippophae_rhamnoides_Hiprha1gene22917 Alkaloid ISY low borderline
hippophae_rhamnoides_Hiprha1gene23182 Alkaloid ISY medium pass
hippophae_rhamnoides_Hiprha1gene24704 Alkaloid ISY medium pass
hippophae_rhamnoides_Hiprha1gene25334 Alkaloid ISY medium pass
hippophae_rhamnoides_Hiprha1gene25852 Alkaloid ISY medium pass