PlantSME Plant secondary metabolism enzyme database

Humulus lupulus (humulus_lupulus)

Imported from atlas release summary for Humulus lupulus.

3048
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.61% Alkaloid pathway 19.55% Phenylpropanoid pathway 18.83% Flavonoid pathway 13.52% Rosmarinic acid pathway 10.17% Steroid pathway 7.32%
Family Distribution
BAHD 6.07% C4H 6.02% C3'H/CYP98A 4.96% UGT 4.17% 7DLGT 3.82% UFGT 3.69% CYP76 3.69% 4CL 3.61%
Other Families 63.98%
More Families (98)
CAS 256 3.31% POD 248 3.21% IFS 231 2.99% T3O 216 2.8% F3H 195 2.52% DWF4/CYP90B1 183 2.37% F3'H/CYP75B 161 2.08% CAD 148 1.92% BR6OX2/CYP85A2 146 1.89% NMT 128 1.66% HCT 113 1.46% CODM/T6ODM 110 1.42% H6H 106 1.37% G8O/G8H 103 1.33% CYP71 99 1.28% STR 97 1.26% GES 89 1.15% TPS 89 1.15% CYP90D1 85 1.1% AACT 85 1.1% T16H 84 1.09% PMK 83 1.07% RAS 82 1.06% TAT 79 1.02% SMT1/SMT2/SMT3 79 1.02% TRI/TRII 69 0.89% PAL 66 0.85% CSE 66 0.85% LAC 62 0.8% ANR 59 0.76% LAMT 56 0.72% PMT 55 0.71% IO 55 0.71% FNS 53 0.69% F5H/CYP84A 52 0.67% HMGR 51 0.66% SGD 50 0.65% F3'5'H/CYP75A 50 0.65% GS 48 0.62% PYKS 46 0.6% TYDC_DDC 46 0.6% NCS 44 0.57% COMT 43 0.56% BBE 41 0.53% IFR 37 0.48% 7DLH 33 0.43% 16OMT 32 0.41% TDC 27 0.35% CYP51G1 27 0.35% 8HGO 26 0.34% ANS/LDOX 26 0.34% COR 22 0.28% DFR 21 0.27% CCR 21 0.27% SLS 19 0.25% CHS 19 0.25% BR6OX1/CYP85A1 18 0.23% ROT3/CYP90C1 18 0.23% HPPR 16 0.21% MVD 16 0.21% 6OMT_4OMT_SOMT 15 0.19% DWF5 14 0.18% SQS/FDFT1 14 0.18% CNMT 13 0.17% DXR 13 0.17% CYP719 12 0.16% CCoAOMT 12 0.16% SQE 12 0.16% MPO 10 0.13% ISY 10 0.13% CPD/CYP90A1 10 0.13% FPPS 10 0.13% XMT_MXMT_DXMT 9 0.12% SMO1/SMO2 9 0.12% CHI 8 0.1% CPR 8 0.1% IDI 8 0.1% GGPPS 8 0.1% CYP80B1 7 0.09% DET2 6 0.08% DWF7 6 0.08% CPI1 5 0.06% DWF1 4 0.05% DXS 4 0.05% MCT/IspD 4 0.05% FLS 3 0.04% CMK/IspE 3 0.04% MVK 3 0.04% HMGS 3 0.04% MDS/IspF 3 0.04% CYP80F1 2 0.03% ODC 2 0.03% ADC 2 0.03% FK 2 0.03% GPPS 2 0.03% HYD1 1 0.01% HDR/IspH 1 0.01% HDS/IspG 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 933 19 BAHD (329) View species results
Alkaloid pathway 596 25 7DLGT (136) View species results
Phenylpropanoid pathway 574 12 POD (219) View species results
Flavonoid pathway 412 14 UFGT (267) View species results
Rosmarinic acid pathway 310 7 C4H (102) View species results
Steroid pathway 223 14 CAS (144) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2744 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 664 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status Best Target
Hlup005880F0801210.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Hlup005944F0803270.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Hlup006476F0825090.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Hlup007712F0863460.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Hlup008126F0872440.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Hlup008241F0874890.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Hlup008367F0877500.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Hlup008920F0887430.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Hlup011046F0909100.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Hlup011081F0909220.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO