Humulus lupulus (humulus_lupulus)
Imported from atlas release summary for Humulus lupulus.
3048
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3048
Candidate Genes
BAHD
6.07%
C4H
6.02%
C3'H/CYP98A
4.96%
UGT
4.17%
7DLGT
3.82%
UFGT
3.69%
CYP76
3.69%
4CL
3.61%
Other Families
63.98%
More Families (98)
CAS
256
3.31%
POD
248
3.21%
IFS
231
2.99%
T3O
216
2.8%
F3H
195
2.52%
DWF4/CYP90B1
183
2.37%
F3'H/CYP75B
161
2.08%
CAD
148
1.92%
BR6OX2/CYP85A2
146
1.89%
NMT
128
1.66%
HCT
113
1.46%
CODM/T6ODM
110
1.42%
H6H
106
1.37%
G8O/G8H
103
1.33%
CYP71
99
1.28%
STR
97
1.26%
GES
89
1.15%
TPS
89
1.15%
CYP90D1
85
1.1%
AACT
85
1.1%
T16H
84
1.09%
PMK
83
1.07%
RAS
82
1.06%
TAT
79
1.02%
SMT1/SMT2/SMT3
79
1.02%
TRI/TRII
69
0.89%
PAL
66
0.85%
CSE
66
0.85%
LAC
62
0.8%
ANR
59
0.76%
LAMT
56
0.72%
PMT
55
0.71%
IO
55
0.71%
FNS
53
0.69%
F5H/CYP84A
52
0.67%
HMGR
51
0.66%
SGD
50
0.65%
F3'5'H/CYP75A
50
0.65%
GS
48
0.62%
PYKS
46
0.6%
TYDC_DDC
46
0.6%
NCS
44
0.57%
COMT
43
0.56%
BBE
41
0.53%
IFR
37
0.48%
7DLH
33
0.43%
16OMT
32
0.41%
TDC
27
0.35%
CYP51G1
27
0.35%
8HGO
26
0.34%
ANS/LDOX
26
0.34%
COR
22
0.28%
DFR
21
0.27%
CCR
21
0.27%
SLS
19
0.25%
CHS
19
0.25%
BR6OX1/CYP85A1
18
0.23%
ROT3/CYP90C1
18
0.23%
HPPR
16
0.21%
MVD
16
0.21%
6OMT_4OMT_SOMT
15
0.19%
DWF5
14
0.18%
SQS/FDFT1
14
0.18%
CNMT
13
0.17%
DXR
13
0.17%
CYP719
12
0.16%
CCoAOMT
12
0.16%
SQE
12
0.16%
MPO
10
0.13%
ISY
10
0.13%
CPD/CYP90A1
10
0.13%
FPPS
10
0.13%
XMT_MXMT_DXMT
9
0.12%
SMO1/SMO2
9
0.12%
CHI
8
0.1%
CPR
8
0.1%
IDI
8
0.1%
GGPPS
8
0.1%
CYP80B1
7
0.09%
DET2
6
0.08%
DWF7
6
0.08%
CPI1
5
0.06%
DWF1
4
0.05%
DXS
4
0.05%
MCT/IspD
4
0.05%
FLS
3
0.04%
CMK/IspE
3
0.04%
MVK
3
0.04%
HMGS
3
0.04%
MDS/IspF
3
0.04%
CYP80F1
2
0.03%
ODC
2
0.03%
ADC
2
0.03%
FK
2
0.03%
GPPS
2
0.03%
HYD1
1
0.01%
HDR/IspH
1
0.01%
HDS/IspG
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 933 | 19 | BAHD (329) | View species results |
| Alkaloid pathway | 596 | 25 | 7DLGT (136) | View species results |
| Phenylpropanoid pathway | 574 | 12 | POD (219) | View species results |
| Flavonoid pathway | 412 | 14 | UFGT (267) | View species results |
| Rosmarinic acid pathway | 310 | 7 | C4H (102) | View species results |
| Steroid pathway | 223 | 14 | CAS (144) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2744 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 664 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Hlup004388F0712610.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004388F0712620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004388F0712630.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004388F0712640.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004388F0712650.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004559F0726010.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004559F0726020.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004559F0726040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup004921F0750430.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Hlup004928F0751080.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Hlup005438F0779710.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup006060F0808010.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup006663F0832510.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Hlup006999F0843020.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Hlup007680F0862660.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup007906F0867950.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup008123F0872320.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup008198F0874280.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Hlup008979F0888370.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |