Lonicera japonica (lonicera_japonica)
Imported from atlas release summary for Lonicera japonica.
2714
Candidate Protein Records
2547
Pathway-Level Records
5787
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5787
Family-Level Calls
UGT
6.91%
C4H
6.65%
7DLGT
5.94%
UFGT
5.69%
C3'H/CYP98A
5.53%
BAHD
4.84%
CYP76
3.68%
IFS
3.51%
Other Families
57.25%
More Families (97)
F3H
162
2.8%
POD
162
2.8%
T3O
138
2.38%
F3'H/CYP75B
126
2.18%
4CL
120
2.07%
NMT
100
1.73%
CODM/T6ODM
96
1.66%
STR
93
1.61%
DWF4/CYP90B1
93
1.61%
CAS
92
1.59%
CAD
90
1.56%
TPS
89
1.54%
BR6OX2/CYP85A2
87
1.5%
H6H
82
1.42%
GES
81
1.4%
G8O/G8H
79
1.37%
BBE
77
1.33%
7DLH
73
1.26%
IO
63
1.09%
SMT1/SMT2/SMT3
63
1.09%
LAC
62
1.07%
CSE
55
0.95%
TRI/TRII
53
0.92%
GS
53
0.92%
SLS
53
0.92%
FNS
48
0.83%
IFR
46
0.79%
F3'5'H/CYP75A
46
0.79%
CYP71
45
0.78%
HCT
44
0.76%
T16H
42
0.73%
CYP90D1
41
0.71%
NCS
35
0.6%
CPD/CYP90A1
35
0.6%
PYKS
33
0.57%
RAS
32
0.55%
BR6OX1/CYP85A1
32
0.55%
COMT
31
0.54%
ANR
30
0.52%
SGD
28
0.48%
F5H/CYP84A
28
0.48%
TAT
28
0.48%
ANS/LDOX
27
0.47%
CCR
27
0.47%
PMT
25
0.43%
COR
19
0.33%
DFR
19
0.33%
8HGO
18
0.31%
DXS
17
0.29%
16OMT
16
0.28%
PAL
15
0.26%
ROT3/CYP90C1
15
0.26%
MVK
15
0.26%
LAMT
13
0.22%
GGPPS
13
0.22%
MPO
12
0.21%
CYP80B1
12
0.21%
CYP51G1
12
0.21%
CYP719
11
0.19%
ISY
10
0.17%
SQE
10
0.17%
FPPS
10
0.17%
CCoAOMT
9
0.16%
CPR
9
0.16%
SQS/FDFT1
9
0.16%
CHS
8
0.14%
HPPR
8
0.14%
CYP80F1
7
0.12%
XMT_MXMT_DXMT
6
0.1%
AACT
6
0.1%
MCT/IspD
6
0.1%
TYDC_DDC
5
0.09%
CNMT
5
0.09%
DET2
5
0.09%
HMGS
5
0.09%
HMGR
5
0.09%
SMO1/SMO2
4
0.07%
MVD
4
0.07%
CHI
3
0.05%
FLS
3
0.05%
IDI
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
TDC
2
0.03%
HDS/IspG
2
0.03%
DXR
2
0.03%
PMK
2
0.03%
ODC
1
0.02%
ADC
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 878 | 20 | UGT (373) | View species results |
| Alkaloid pathway | 625 | 24 | 7DLGT (175) | View species results |
| Phenylpropanoid pathway | 422 | 13 | POD (148) | View species results |
| Flavonoid pathway | 377 | 15 | UFGT (279) | View species results |
| Steroid pathway | 138 | 13 | CAS (71) | View species results |
| Rosmarinic acid pathway | 107 | 7 | C4H (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2159 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 356 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| LONjap03G0028580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| LONjap03G0034700.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| LONjap04G0031890.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap05G0013780.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| LONjap05G0024550.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| LONjap05G0024560.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| LONjap05G0025680.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap05G0025750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap05G0025790.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap05G0025800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap06G0021130.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap06G0026840.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| LONjap07G0023860.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap08G0018390.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap09G0016220.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap09G0016230.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap09G0017380.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| LONjap09G0027920.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000000360004520.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000000360004530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000000810007680.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000000810007690.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000000810007700.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000001080013410.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| LONjapGWHAAZE000001130014320.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000001130014330.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjapGWHAAZE000001140014350.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| LONjap01G0022550.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| LONjap02G0018470.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| LONjap02G0018480.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| LONjap02G0018490.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| LONjap02G0046700.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| LONjap08G0008490.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA |
| LONjap09G0002730.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| LONjap09G0002740.1 | Alkaloid | XMT_MXMT_DXMT | medium | pass | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| LONjap09G0002910.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| LONjap09G0002930.1 | Alkaloid | XMT_MXMT_DXMT | medium | pass | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| LONjap09G0002950.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |