PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
ORGLA02G0060600.1 Rosmarinic Acid C4H medium pass
ORGLA02G0060700.1 Rosmarinic Acid C4H low borderline
ORGLA02G0060800.1 Rosmarinic Acid C4H medium pass
ORGLA02G0075200.1 Rosmarinic Acid C4H low borderline
ORGLA02G0082000.1 Rosmarinic Acid C4H low borderline
ORGLA02G0126400.1 Rosmarinic Acid C4H low borderline
ORGLA02G0140700.1 Rosmarinic Acid C4H low borderline
ORGLA02G0140800.1 Rosmarinic Acid C4H low borderline
ORGLA02G0182500.1 Rosmarinic Acid C4H low borderline
ORGLA02G0182700.1 Rosmarinic Acid C4H medium pass
ORGLA02G0182800.1 Rosmarinic Acid C4H medium pass
ORGLA02G0183100.1 Rosmarinic Acid C4H low borderline
ORGLA02G0183200.1 Rosmarinic Acid C4H low borderline
ORGLA02G0183900.1 Rosmarinic Acid C4H low borderline
ORGLA02G0198300.1 Rosmarinic Acid C4H low borderline
ORGLA02G0198400.1 Rosmarinic Acid C4H low borderline
ORGLA02G0251400.1 Rosmarinic Acid C4H low borderline
ORGLA02G0361000.1 Rosmarinic Acid C4H low borderline
ORGLA03G0007900.1 Rosmarinic Acid C4H medium pass
ORGLA03G0025200.1 Rosmarinic Acid C4H medium pass
ORGLA03G0049000.1 Rosmarinic Acid C4H low borderline
ORGLA03G0101400.1 Rosmarinic Acid C4H low borderline
ORGLA03G0101500.1 Rosmarinic Acid C4H medium pass
ORGLA03G0102600.1 Rosmarinic Acid C4H medium pass
ORGLA03G0174900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0219300.1 Rosmarinic Acid C4H low borderline
ORGLA03G0220200.1 Rosmarinic Acid C4H low borderline
ORGLA03G0230900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0231600.1 Rosmarinic Acid C4H low borderline
ORGLA03G0231700.1 Rosmarinic Acid C4H medium pass
ORGLA03G0232000.1 Rosmarinic Acid C4H medium pass
ORGLA03G0232100.1 Rosmarinic Acid C4H medium pass
ORGLA03G0235900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0303800.1 Rosmarinic Acid C4H low borderline
ORGLA03G0319800.1 Rosmarinic Acid C4H low borderline
ORGLA03G0319900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0369400.1 Rosmarinic Acid C4H low borderline
ORGLA03G0378900.1 Rosmarinic Acid C4H medium pass
ORGLA03G0389200.1 Rosmarinic Acid C4H medium pass
ORGLA04G0000500.1 Rosmarinic Acid C4H medium pass
ORGLA04G0010700.1 Rosmarinic Acid C4H low borderline
ORGLA04G0018200.1 Rosmarinic Acid C4H low borderline
ORGLA04G0018800.1 Rosmarinic Acid C4H low borderline
ORGLA04G0020400.1 Rosmarinic Acid C4H low borderline
ORGLA04G0021400.1 Rosmarinic Acid C4H low borderline
ORGLA04G0040600.1 Rosmarinic Acid C4H low borderline
ORGLA04G0086300.1 Rosmarinic Acid C4H low borderline
ORGLA04G0126200.1 Rosmarinic Acid C4H low borderline
ORGLA04G0132700.1 Rosmarinic Acid C4H low borderline
ORGLA04G0132900.1 Rosmarinic Acid C4H low borderline