PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA01G0121000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0173600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0173700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0173800.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189500.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0190000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0229400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0281700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0282200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0317200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0379200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0381900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0059300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0060100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0060600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0075200.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA02G0326100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0331300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0101400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0174900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0177900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0178100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0219300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0231700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0232000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0232100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0260600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0260900.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA03G0319900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA04G0013000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA04G0020400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA04G0021400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA04G0040600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA04G0086300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA04G0132700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA04G0132900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA05G0120900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA05G0125600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA05G0139500.1 Steroid DWF4/CYP90B1 low borderline
ORGLA05G0147900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA05G0179700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0000600.1 Steroid DWF4/CYP90B1 low borderline