PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
ORGLA06G0054200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0054300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0157100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0157400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0157500.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0185900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0186000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0186300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0205000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA06G0254900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA07G0090700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA07G0099700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA07G0100200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA07G0224800.1 Steroid DWF4/CYP90B1 low borderline
ORGLA07G0264400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA07G0264500.1 Steroid DWF4/CYP90B1 low borderline
ORGLA07G0264600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA08G0057600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA08G0148800.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA08G0210800.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA09G0072200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA09G0135600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA09G0138500.1 Steroid DWF4/CYP90B1 low borderline
ORGLA09G0168100.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA10G0016800.1 Steroid DWF4/CYP90B1 low borderline
ORGLA10G0018600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA10G0027800.1 Steroid DWF4/CYP90B1 low borderline
ORGLA10G0031000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA10G0045600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA11G0030700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA11G0169700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA11G0222700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0008800.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA12G0019300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0028900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0076100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0110200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0119600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0200600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0201000.1 Steroid DWF4/CYP90B1 medium pass