PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
ORGLA01G0046300.1 Flavonoid F3H medium borderline
ORGLA01G0053600.1 Flavonoid F3H low borderline
ORGLA01G0122100.1 Flavonoid F3H medium borderline
ORGLA01G0122200.1 Flavonoid F3H medium borderline
ORGLA01G0129300.1 Flavonoid F3H medium borderline
ORGLA01G0249500.1 Flavonoid F3H low borderline
ORGLA01G0255600.1 Flavonoid F3H medium borderline
ORGLA01G0300500.1 Flavonoid F3H medium borderline
ORGLA01G0334700.1 Flavonoid F3H medium borderline
ORGLA01G0368900.1 Flavonoid F3H medium borderline
ORGLA02G0110100.1 Flavonoid F3H medium borderline
ORGLA02G0125100.1 Flavonoid F3H medium borderline
ORGLA02G0292600.1 Flavonoid F3H medium borderline
ORGLA02G0295500.1 Flavonoid F3H medium borderline
ORGLA02G0360000.1 Flavonoid F3H medium borderline
ORGLA03G0015300.1 Flavonoid F3H medium borderline
ORGLA03G0211300.1 Flavonoid F3H medium borderline
ORGLA03G0212100.1 Flavonoid F3H medium borderline
ORGLA03G0242800.1 Flavonoid F3H medium borderline
ORGLA03G0286800.1 Flavonoid F3H medium borderline
ORGLA03G0384500.1 Flavonoid F3H medium borderline
ORGLA03G0385200.1 Flavonoid F3H medium pass
ORGLA03G0387400.1 Flavonoid F3H medium borderline
ORGLA04G0022100.1 Flavonoid F3H medium borderline
ORGLA04G0086200.1 Flavonoid F3H low borderline
ORGLA04G0129800.1 Flavonoid F3H medium pass
ORGLA04G0161500.1 Flavonoid F3H medium borderline
ORGLA04G0198200.1 Flavonoid F3H medium borderline
ORGLA04G0198300.1 Flavonoid F3H medium borderline
ORGLA04G0247100.1 Flavonoid F3H medium borderline
ORGLA04G0251000.1 Flavonoid F3H medium borderline
ORGLA04G0251200.1 Flavonoid F3H medium borderline
ORGLA05G0019500.1 Flavonoid F3H medium borderline
ORGLA05G0038400.1 Flavonoid F3H low borderline
ORGLA05G0059900.1 Flavonoid F3H low borderline
ORGLA05G0079900.1 Flavonoid F3H low borderline
ORGLA05G0146800.1 Flavonoid F3H medium borderline
ORGLA05G0198500.1 Flavonoid F3H medium borderline
ORGLA05G0221300.1 Flavonoid F3H medium borderline
ORGLA06G0038300.1 Flavonoid F3H medium borderline
ORGLA06G0046100.1 Flavonoid F3H medium pass
ORGLA06G0046300.1 Flavonoid F3H medium borderline
ORGLA06G0046500.1 Flavonoid F3H medium borderline
ORGLA06G0046600.1 Flavonoid F3H medium borderline
ORGLA06G0091500.1 Flavonoid F3H medium borderline
ORGLA06G0091600.1 Flavonoid F3H medium borderline
ORGLA06G0158700.1 Flavonoid F3H medium borderline
ORGLA07G0002700.1 Flavonoid F3H low borderline
ORGLA07G0037600.1 Flavonoid F3H low borderline
ORGLA07G0037700.1 Flavonoid F3H medium pass