PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
ORGLA01G0050300.1 Alkaloid T3O medium pass
ORGLA01G0050400.1 Alkaloid T3O medium pass
ORGLA01G0058700.1 Alkaloid T3O medium pass
ORGLA01G0072100.1 Alkaloid T3O medium borderline
ORGLA01G0131600.1 Alkaloid T3O medium borderline
ORGLA01G0229400.1 Alkaloid T3O medium borderline
ORGLA01G0281700.1 Alkaloid T3O medium pass
ORGLA01G0281800.1 Alkaloid T3O low borderline
ORGLA01G0281900.1 Alkaloid T3O medium pass
ORGLA01G0282000.1 Alkaloid T3O low borderline
ORGLA01G0282200.1 Alkaloid T3O low borderline
ORGLA01G0282300.1 Alkaloid T3O medium pass
ORGLA01G0314900.1 Alkaloid T3O low borderline
ORGLA01G0317200.1 Alkaloid T3O medium pass
ORGLA01G0379100.1 Alkaloid T3O low borderline
ORGLA01G0379200.1 Alkaloid T3O medium pass
ORGLA01G0381900.1 Alkaloid T3O medium borderline
ORGLA01G0382000.1 Alkaloid T3O medium borderline
ORGLA02G0007400.1 Alkaloid T3O low borderline
ORGLA02G0059400.1 Alkaloid T3O medium borderline
ORGLA02G0059500.1 Alkaloid T3O medium borderline
ORGLA02G0059600.1 Alkaloid T3O medium borderline
ORGLA02G0059700.1 Alkaloid T3O medium borderline
ORGLA02G0060000.1 Alkaloid T3O medium borderline
ORGLA02G0060100.1 Alkaloid T3O medium borderline
ORGLA02G0060200.1 Alkaloid T3O medium borderline
ORGLA02G0060600.1 Alkaloid T3O medium borderline
ORGLA02G0060700.1 Alkaloid T3O medium borderline
ORGLA02G0060800.1 Alkaloid T3O medium borderline
ORGLA02G0182700.1 Alkaloid T3O medium borderline
ORGLA02G0182800.1 Alkaloid T3O medium borderline
ORGLA02G0183100.1 Alkaloid T3O high pass
ORGLA02G0183200.1 Alkaloid T3O medium borderline
ORGLA02G0183900.1 Alkaloid T3O medium borderline
ORGLA02G0194600.1 Alkaloid T3O medium pass
ORGLA02G0198300.1 Alkaloid T3O medium borderline
ORGLA02G0198400.1 Alkaloid T3O medium borderline
ORGLA02G0233400.1 Alkaloid T3O low borderline
ORGLA02G0251400.1 Alkaloid T3O medium pass
ORGLA02G0326100.1 Alkaloid T3O medium pass
ORGLA03G0028100.1 Alkaloid T3O medium pass
ORGLA03G0029100.1 Alkaloid T3O medium pass
ORGLA03G0029200.1 Alkaloid T3O low borderline
ORGLA03G0029300.1 Alkaloid T3O low borderline
ORGLA03G0029400.1 Alkaloid T3O low borderline
ORGLA03G0029600.1 Alkaloid T3O medium pass
ORGLA03G0049000.1 Alkaloid T3O low borderline
ORGLA03G0086200.1 Alkaloid T3O low borderline
ORGLA03G0101400.1 Alkaloid T3O medium borderline
ORGLA03G0101500.1 Alkaloid T3O medium borderline