PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
ORGLA03G0230900.1 Alkaloid T3O medium borderline
ORGLA03G0231600.1 Alkaloid T3O medium borderline
ORGLA03G0231700.1 Alkaloid T3O medium borderline
ORGLA03G0232000.1 Alkaloid T3O medium borderline
ORGLA03G0232100.1 Alkaloid T3O medium borderline
ORGLA03G0235500.1 Alkaloid T3O medium pass
ORGLA03G0260900.1 Alkaloid T3O medium pass
ORGLA03G0324500.1 Alkaloid T3O low borderline
ORGLA03G0369400.1 Alkaloid T3O medium pass
ORGLA03G0378900.1 Alkaloid T3O medium borderline
ORGLA03G0389200.1 Alkaloid T3O medium borderline
ORGLA04G0000500.1 Alkaloid T3O medium borderline
ORGLA04G0020400.1 Alkaloid T3O medium borderline
ORGLA04G0021400.1 Alkaloid T3O medium borderline
ORGLA04G0132700.1 Alkaloid T3O medium borderline
ORGLA04G0185700.1 Alkaloid T3O low borderline
ORGLA04G0191500.1 Alkaloid T3O medium pass
ORGLA04G0191900.1 Alkaloid T3O medium pass
ORGLA05G0048800.1 Alkaloid T3O medium pass
ORGLA05G0061200.1 Alkaloid T3O medium pass
ORGLA05G0125600.1 Alkaloid T3O medium pass
ORGLA05G0147900.1 Alkaloid T3O medium borderline
ORGLA05G0158900.1 Alkaloid T3O low borderline
ORGLA05G0185200.1 Alkaloid T3O medium borderline
ORGLA06G0000600.1 Alkaloid T3O medium borderline
ORGLA06G0006400.1 Alkaloid T3O medium pass
ORGLA06G0117400.1 Alkaloid T3O medium borderline
ORGLA06G0131500.1 Alkaloid T3O medium borderline
ORGLA06G0133500.1 Alkaloid T3O medium borderline
ORGLA06G0133700.1 Alkaloid T3O medium borderline
ORGLA06G0155600.1 Alkaloid T3O medium pass
ORGLA06G0174600.1 Alkaloid T3O medium borderline
ORGLA06G0185800.1 Alkaloid T3O medium borderline
ORGLA06G0185900.1 Alkaloid T3O medium borderline
ORGLA06G0186000.1 Alkaloid T3O medium borderline
ORGLA06G0186200.1 Alkaloid T3O medium borderline
ORGLA06G0186400.1 Alkaloid T3O medium borderline
ORGLA06G0186500.1 Alkaloid T3O medium borderline
ORGLA06G0186600.1 Alkaloid T3O medium borderline
ORGLA06G0205000.1 Alkaloid T3O medium borderline
ORGLA06G0264200.1 Alkaloid T3O medium borderline
ORGLA07G0062000.1 Alkaloid T3O medium borderline
ORGLA07G0090700.1 Alkaloid T3O medium borderline
ORGLA07G0134900.1 Alkaloid T3O medium pass
ORGLA07G0135000.1 Alkaloid T3O medium pass
ORGLA07G0135300.1 Alkaloid T3O medium pass
ORGLA07G0135400.1 Alkaloid T3O medium pass
ORGLA07G0135500.1 Alkaloid T3O medium pass
ORGLA07G0135600.1 Alkaloid T3O medium pass
ORGLA07G0135700.1 Alkaloid T3O medium pass