PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
ORGLA06G0069300.1 Flavonoid UFGT medium pass
ORGLA06G0072500.1 Flavonoid UFGT medium pass
ORGLA06G0101100.1 Flavonoid UFGT medium pass
ORGLA06G0101300.1 Flavonoid UFGT medium pass
ORGLA06G0101400.1 Flavonoid UFGT medium pass
ORGLA06G0101600.1 Flavonoid UFGT medium pass
ORGLA06G0101800.1 Flavonoid UFGT medium pass
ORGLA06G0105200.1 Flavonoid UFGT high pass
ORGLA06G0105400.1 Flavonoid UFGT high pass
ORGLA06G0105700.1 Flavonoid UFGT medium pass
ORGLA06G0105900.1 Flavonoid UFGT high pass
ORGLA06G0124000.1 Flavonoid UFGT high pass
ORGLA06G0162400.1 Flavonoid UFGT high pass
ORGLA06G0162500.1 Flavonoid UFGT medium pass
ORGLA06G0164100.1 Flavonoid UFGT medium pass
ORGLA06G0164200.1 Flavonoid UFGT medium pass
ORGLA06G0239300.1 Flavonoid UFGT high pass
ORGLA06G0242300.1 Flavonoid UFGT medium pass
ORGLA06G0242400.1 Flavonoid UFGT medium pass
ORGLA06G0255600.1 Flavonoid UFGT high pass
ORGLA06G0289600.1 Flavonoid UFGT medium pass
ORGLA06G0289900.1 Flavonoid UFGT medium pass
ORGLA06G0290500.1 Flavonoid UFGT high pass
ORGLA06G0300100.1 Flavonoid UFGT high pass
ORGLA06G0300500.1 Flavonoid UFGT medium pass
ORGLA07G0026800.1 Flavonoid UFGT high pass
ORGLA07G0055100.1 Flavonoid UFGT medium pass
ORGLA07G0055200.1 Flavonoid UFGT high pass
ORGLA07G0055500.1 Flavonoid UFGT high pass
ORGLA07G0071200.1 Flavonoid UFGT high pass
ORGLA07G0071300.1 Flavonoid UFGT high pass
ORGLA07G0071400.1 Flavonoid UFGT high pass
ORGLA07G0071700.1 Flavonoid UFGT high pass
ORGLA07G0071800.1 Flavonoid UFGT medium pass
ORGLA07G0075500.1 Flavonoid UFGT medium pass
ORGLA07G0100400.1 Flavonoid UFGT low borderline
ORGLA07G0126000.1 Flavonoid UFGT high pass
ORGLA07G0126200.1 Flavonoid UFGT high pass
ORGLA07G0126300.1 Flavonoid UFGT medium pass
ORGLA07G0126400.1 Flavonoid UFGT high pass
ORGLA07G0126600.1 Flavonoid UFGT medium pass
ORGLA07G0129800.1 Flavonoid UFGT high pass
ORGLA07G0129900.1 Flavonoid UFGT high pass
ORGLA07G0152600.1 Flavonoid UFGT high pass
ORGLA07G0175300.1 Flavonoid UFGT medium pass
ORGLA07G0203200.1 Flavonoid UFGT medium pass
ORGLA07G0220400.1 Flavonoid UFGT high pass
ORGLA07G0220500.1 Flavonoid UFGT medium pass
ORGLA07G0236500.1 Flavonoid UFGT high pass
ORGLA07G0236600.1 Flavonoid UFGT medium pass