PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
ORGLA01G0006500.1 Terpenoid AACT medium borderline
ORGLA02G0069100.1 Terpenoid AACT low borderline
ORGLA02G0325800.1 Terpenoid AACT medium borderline
ORGLA07G0004100.1 Terpenoid AACT low borderline
ORGLA09G0020200.1 Terpenoid AACT low borderline
ORGLA10G0108200.1 Terpenoid AACT medium borderline
ORGLA01G0003100.1 Terpenoid BAHD medium pass
ORGLA01G0033800.1 Terpenoid BAHD low borderline
ORGLA01G0047500.1 Terpenoid BAHD medium pass
ORGLA01G0051800.1 Terpenoid BAHD medium pass
ORGLA01G0063100.1 Terpenoid BAHD low borderline
ORGLA01G0086800.1 Terpenoid BAHD medium pass
ORGLA01G0102200.1 Terpenoid BAHD low borderline
ORGLA01G0102900.1 Terpenoid BAHD medium pass
ORGLA01G0105400.1 Terpenoid BAHD medium pass
ORGLA01G0109000.1 Terpenoid BAHD medium pass
ORGLA01G0115700.1 Terpenoid BAHD medium pass
ORGLA01G0117100.1 Terpenoid BAHD medium pass
ORGLA01G0117200.1 Terpenoid BAHD low borderline
ORGLA01G0121100.1 Terpenoid BAHD medium pass
ORGLA01G0131800.1 Terpenoid BAHD low borderline
ORGLA01G0182300.1 Terpenoid BAHD medium pass
ORGLA01G0190500.1 Terpenoid BAHD low borderline
ORGLA01G0191500.1 Terpenoid BAHD medium pass
ORGLA01G0201400.1 Terpenoid BAHD medium pass
ORGLA01G0217900.1 Terpenoid BAHD medium pass
ORGLA01G0240900.1 Terpenoid BAHD medium pass
ORGLA01G0271600.1 Terpenoid BAHD medium pass
ORGLA01G0301100.1 Terpenoid BAHD low borderline
ORGLA01G0308500.1 Terpenoid BAHD medium pass
ORGLA01G0314600.1 Terpenoid BAHD medium pass
ORGLA01G0315000.1 Terpenoid BAHD medium pass
ORGLA01G0376400.1 Terpenoid BAHD low borderline
ORGLA01G0400300.1 Terpenoid BAHD low borderline
ORGLA02G0004100.1 Terpenoid BAHD low borderline
ORGLA02G0009500.1 Terpenoid BAHD low borderline
ORGLA02G0009700.1 Terpenoid BAHD medium pass
ORGLA02G0058800.1 Terpenoid BAHD medium pass
ORGLA02G0131500.1 Terpenoid BAHD low borderline
ORGLA02G0134600.1 Terpenoid BAHD medium pass
ORGLA02G0138800.1 Terpenoid BAHD medium pass
ORGLA02G0147300.1 Terpenoid BAHD medium pass
ORGLA02G0147400.1 Terpenoid BAHD low borderline
ORGLA02G0147600.1 Terpenoid BAHD medium pass
ORGLA02G0148000.1 Terpenoid BAHD medium pass
ORGLA02G0206100.1 Terpenoid BAHD medium pass
ORGLA02G0239100.1 Terpenoid BAHD medium pass
ORGLA02G0243900.1 Terpenoid BAHD medium pass
ORGLA02G0252600.1 Terpenoid BAHD low borderline
ORGLA02G0255900.1 Terpenoid BAHD medium pass