PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA06G0114300.1 Alkaloid LAMT medium borderline
ORGLA06G0114400.1 Alkaloid LAMT medium borderline
ORGLA06G0114600.1 Alkaloid LAMT medium borderline
ORGLA06G0114700.1 Alkaloid LAMT medium borderline
ORGLA06G0119500.1 Alkaloid LAMT medium borderline
ORGLA06G0294500.1 Alkaloid LAMT medium borderline
ORGLA06G0301200.1 Alkaloid LAMT medium borderline
ORGLA06G0302000.1 Alkaloid LAMT medium borderline
ORGLA11G0076800.1 Alkaloid LAMT medium borderline
ORGLA11G0076900.1 Alkaloid LAMT medium borderline
ORGLA11G0077100.1 Alkaloid LAMT medium borderline
ORGLA11G0077200.1 Alkaloid LAMT medium borderline
ORGLA04G0012400.1 Alkaloid MPO low borderline
ORGLA04G0042100.1 Alkaloid MPO low borderline
ORGLA04G0130300.1 Alkaloid MPO high pass
ORGLA06G0121800.1 Alkaloid MPO medium pass
ORGLA06G0121900.1 Alkaloid MPO medium pass
ORGLA07G0250500.1 Alkaloid MPO high pass
ORGLA01G0053600.1 Alkaloid NCS medium borderline
ORGLA01G0122100.1 Alkaloid NCS medium borderline
ORGLA04G0129800.1 Alkaloid NCS medium borderline
ORGLA04G0198200.1 Alkaloid NCS medium borderline
ORGLA04G0201700.1 Alkaloid NCS medium pass
ORGLA04G0201800.1 Alkaloid NCS medium pass
ORGLA04G0251000.1 Alkaloid NCS medium borderline
ORGLA04G0251200.1 Alkaloid NCS medium borderline
ORGLA06G0046000.1 Alkaloid NCS medium borderline
ORGLA06G0046500.1 Alkaloid NCS medium borderline
ORGLA08G0195800.1 Alkaloid NCS medium borderline
ORGLA09G0051100.1 Alkaloid NCS medium borderline
ORGLA09G0051200.1 Alkaloid NCS medium borderline
ORGLA10G0134200.1 Alkaloid NCS medium borderline
ORGLA10G0134500.1 Alkaloid NCS medium borderline
ORGLA10G0134600.1 Alkaloid NCS medium borderline
ORGLA10G0134800.1 Alkaloid NCS medium borderline
ORGLA10G0134900.1 Alkaloid NCS medium borderline
ORGLA11G0198300.1 Alkaloid NCS medium borderline
ORGLA01G0050600.1 Alkaloid NMT low borderline
ORGLA01G0065500.1 Alkaloid NMT low borderline
ORGLA01G0204200.1 Alkaloid NMT low borderline
ORGLA01G0226500.1 Alkaloid NMT medium borderline
ORGLA01G0229300.1 Alkaloid NMT medium borderline
ORGLA01G0284800.1 Alkaloid NMT medium pass
ORGLA01G0334600.1 Alkaloid NMT low borderline
ORGLA01G0387900.1 Alkaloid NMT medium pass
ORGLA02G0016300.1 Alkaloid NMT medium pass
ORGLA02G0030400.1 Alkaloid NMT medium pass
ORGLA02G0174000.1 Alkaloid NMT medium pass
ORGLA02G0205600.1 Alkaloid NMT medium pass
ORGLA02G0206300.1 Alkaloid NMT medium pass