PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA04G0022100.1 Alkaloid H6H medium borderline
ORGLA04G0086200.1 Alkaloid H6H low borderline
ORGLA04G0247100.1 Alkaloid H6H high pass
ORGLA05G0059900.1 Alkaloid H6H low borderline
ORGLA05G0079900.1 Alkaloid H6H low borderline
ORGLA05G0198500.1 Alkaloid H6H low borderline
ORGLA05G0232300.1 Alkaloid H6H low borderline
ORGLA06G0046200.1 Alkaloid H6H medium borderline
ORGLA06G0046600.1 Alkaloid H6H medium borderline
ORGLA07G0002700.1 Alkaloid H6H medium pass
ORGLA07G0037600.1 Alkaloid H6H medium borderline
ORGLA07G0037700.1 Alkaloid H6H medium pass
ORGLA08G0118600.1 Alkaloid H6H low borderline
ORGLA08G0129000.1 Alkaloid H6H low borderline
ORGLA08G0129100.1 Alkaloid H6H low borderline
ORGLA09G0016500.1 Alkaloid H6H low borderline
ORGLA09G0018000.1 Alkaloid H6H low borderline
ORGLA10G0044100.1 Alkaloid H6H low borderline
ORGLA10G0117400.1 Alkaloid H6H low borderline
ORGLA10G0119300.1 Alkaloid H6H medium borderline
ORGLA10G0134300.1 Alkaloid H6H medium borderline
ORGLA10G0135200.1 Alkaloid H6H medium borderline
ORGLA11G0081300.1 Alkaloid H6H low borderline
ORGLA11G0104100.1 Alkaloid H6H medium borderline
ORGLA02G0238500.1 Alkaloid IO low borderline
ORGLA03G0220200.1 Alkaloid IO medium pass
ORGLA03G0319900.1 Alkaloid IO medium borderline
ORGLA04G0086300.1 Alkaloid IO medium borderline
ORGLA04G0273200.1 Alkaloid IO medium borderline
ORGLA05G0000900.1 Alkaloid IO low borderline
ORGLA05G0099000.1 Alkaloid IO medium borderline
ORGLA06G0096600.1 Alkaloid IO medium borderline
ORGLA08G0014600.1 Alkaloid IO medium borderline
ORGLA08G0218500.1 Alkaloid IO medium borderline
ORGLA10G0014900.1 Alkaloid IO low borderline
ORGLA10G0027600.1 Alkaloid IO medium borderline
ORGLA10G0057800.1 Alkaloid IO medium borderline
ORGLA10G0068200.1 Alkaloid IO medium borderline
ORGLA12G0201000.1 Alkaloid IO medium borderline
ORGLA03G0209900.1 Alkaloid ISY medium pass
ORGLA07G0164100.1 Alkaloid ISY medium pass
ORGLA02G0259200.1 Alkaloid LAMT medium borderline
ORGLA04G0249200.1 Alkaloid LAMT medium borderline
ORGLA04G0250200.1 Alkaloid LAMT medium borderline
ORGLA04G0250500.1 Alkaloid LAMT low borderline
ORGLA06G0086000.1 Alkaloid LAMT medium borderline
ORGLA06G0086100.1 Alkaloid LAMT medium borderline
ORGLA06G0086600.1 Alkaloid LAMT medium borderline
ORGLA06G0086700.1 Alkaloid LAMT medium borderline
ORGLA06G0100000.1 Alkaloid LAMT medium borderline