PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
ORGLA04G0061100.1 Alkaloid GES medium pass
ORGLA04G0061400.1 Alkaloid GES medium pass
ORGLA04G0061600.1 Alkaloid GES medium pass
ORGLA04G0061700.1 Alkaloid GES medium pass
ORGLA04G0061800.1 Alkaloid GES low borderline
ORGLA04G0062000.1 Alkaloid GES medium pass
ORGLA04G0062100.1 Alkaloid GES medium pass
ORGLA04G0220500.1 Alkaloid GES medium pass
ORGLA04G0220600.1 Alkaloid GES medium pass
ORGLA08G0019200.1 Alkaloid GES medium pass
ORGLA08G0035100.1 Alkaloid GES medium pass
ORGLA08G0035300.1 Alkaloid GES medium pass
ORGLA08G0035500.1 Alkaloid GES medium pass
ORGLA10G0169100.1 Alkaloid GES low borderline
ORGLA11G0113600.1 Alkaloid GES medium pass
ORGLA12G0113300.1 Alkaloid GES medium pass
ORGLA12G0113400.1 Alkaloid GES medium pass
ORGLA02G0061600.1 Alkaloid GS high pass
ORGLA02G0181800.1 Alkaloid GS low borderline
ORGLA02G0317300.1 Alkaloid GS low borderline
ORGLA02G0349200.1 Alkaloid GS low borderline
ORGLA03G0000400.1 Alkaloid GS low borderline
ORGLA03G0086300.1 Alkaloid GS high pass
ORGLA04G0003500.1 Alkaloid GS low borderline
ORGLA04G0037600.1 Alkaloid GS high pass
ORGLA04G0062300.1 Alkaloid GS low borderline
ORGLA04G0062500.1 Alkaloid GS low borderline
ORGLA04G0067500.1 Alkaloid GS low borderline
ORGLA04G0221000.1 Alkaloid GS high pass
ORGLA08G0000400.1 Alkaloid GS medium pass
ORGLA08G0072700.1 Alkaloid GS high pass
ORGLA08G0113800.1 Alkaloid GS low borderline
ORGLA08G0220300.1 Alkaloid GS medium pass
ORGLA09G0070800.1 Alkaloid GS high pass
ORGLA09G0070900.1 Alkaloid GS high pass
ORGLA09G0071000.1 Alkaloid GS high pass
ORGLA09G0071100.1 Alkaloid GS high pass
ORGLA10G0039300.1 Alkaloid GS high pass
ORGLA10G0094500.1 Alkaloid GS high pass
ORGLA10G0136500.1 Alkaloid GS low borderline
ORGLA01G0249500.1 Alkaloid H6H low borderline
ORGLA01G0299200.1 Alkaloid H6H low borderline
ORGLA01G0300500.1 Alkaloid H6H medium borderline
ORGLA01G0334700.1 Alkaloid H6H high pass
ORGLA01G0368900.1 Alkaloid H6H medium borderline
ORGLA02G0295500.1 Alkaloid H6H medium borderline
ORGLA02G0360000.1 Alkaloid H6H low borderline
ORGLA03G0211300.1 Alkaloid H6H medium borderline
ORGLA03G0212100.1 Alkaloid H6H medium borderline
ORGLA03G0384500.1 Alkaloid H6H medium borderline