PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
ORGLA04G0010700.1 Alkaloid G8O/G8H medium borderline
ORGLA04G0040600.1 Alkaloid G8O/G8H medium borderline
ORGLA04G0172900.1 Alkaloid G8O/G8H medium borderline
ORGLA06G0107100.1 Alkaloid G8O/G8H medium borderline
ORGLA06G0118900.1 Alkaloid G8O/G8H medium borderline
ORGLA06G0126300.1 Alkaloid G8O/G8H medium borderline
ORGLA06G0147900.1 Alkaloid G8O/G8H low borderline
ORGLA06G0157400.1 Alkaloid G8O/G8H medium borderline
ORGLA06G0157500.1 Alkaloid G8O/G8H medium borderline
ORGLA06G0186800.1 Alkaloid G8O/G8H medium borderline
ORGLA06G0243000.1 Alkaloid G8O/G8H medium borderline
ORGLA07G0231800.1 Alkaloid G8O/G8H medium borderline
ORGLA08G0024900.1 Alkaloid G8O/G8H medium borderline
ORGLA08G0153100.1 Alkaloid G8O/G8H medium borderline
ORGLA08G0175200.1 Alkaloid G8O/G8H medium pass
ORGLA09G0062700.1 Alkaloid G8O/G8H medium borderline
ORGLA09G0134300.1 Alkaloid G8O/G8H medium borderline
ORGLA09G0138500.1 Alkaloid G8O/G8H low borderline
ORGLA09G0170600.1 Alkaloid G8O/G8H medium borderline
ORGLA10G0016800.1 Alkaloid G8O/G8H medium borderline
ORGLA10G0018600.1 Alkaloid G8O/G8H medium borderline
ORGLA10G0027400.1 Alkaloid G8O/G8H medium pass
ORGLA10G0030900.1 Alkaloid G8O/G8H low borderline
ORGLA10G0031000.1 Alkaloid G8O/G8H medium borderline
ORGLA11G0117100.1 Alkaloid G8O/G8H medium borderline
ORGLA11G0211200.1 Alkaloid G8O/G8H medium borderline
ORGLA12G0200600.1 Alkaloid G8O/G8H medium borderline
ORGLA01G0117800.1 Alkaloid GES medium pass
ORGLA01G0118300.1 Alkaloid GES low borderline
ORGLA02G0015300.1 Alkaloid GES medium pass
ORGLA02G0136100.1 Alkaloid GES medium pass
ORGLA02G0183000.1 Alkaloid GES medium pass
ORGLA02G0183400.1 Alkaloid GES low borderline
ORGLA02G0183500.1 Alkaloid GES medium pass
ORGLA02G0183700.1 Alkaloid GES medium pass
ORGLA02G0184000.1 Alkaloid GES medium pass
ORGLA03G0164700.1 Alkaloid GES medium pass
ORGLA03G0164800.1 Alkaloid GES medium pass
ORGLA03G0171700.1 Alkaloid GES medium pass
ORGLA03G0171800.1 Alkaloid GES low borderline
ORGLA03G0172000.1 Alkaloid GES medium pass
ORGLA03G0172100.1 Alkaloid GES medium pass
ORGLA03G0172200.1 Alkaloid GES low borderline
ORGLA03G0206300.1 Alkaloid GES medium pass
ORGLA04G0004300.1 Alkaloid GES medium pass
ORGLA04G0021100.1 Alkaloid GES medium pass
ORGLA04G0060400.1 Alkaloid GES medium pass
ORGLA04G0060500.1 Alkaloid GES low borderline
ORGLA04G0060900.1 Alkaloid GES medium pass
ORGLA04G0061000.1 Alkaloid GES low borderline