PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
ORGLA04G0213100.1 Flavonoid ANR medium borderline
ORGLA04G0213200.1 Flavonoid ANR medium borderline
ORGLA04G0213300.1 Flavonoid ANR medium borderline
ORGLA04G0233400.1 Flavonoid ANR medium borderline
ORGLA04G0233500.1 Flavonoid ANR medium borderline
ORGLA04G0233600.1 Flavonoid ANR medium borderline
ORGLA06G0192400.1 Flavonoid ANR medium borderline
ORGLA06G0192500.1 Flavonoid ANR medium borderline
ORGLA06G0264600.1 Flavonoid ANR medium borderline
ORGLA06G0264800.1 Flavonoid ANR low borderline
ORGLA06G0264900.1 Flavonoid ANR medium pass
ORGLA07G0161400.1 Flavonoid ANR medium pass
ORGLA07G0163700.1 Flavonoid ANR medium borderline
ORGLA07G0163800.1 Flavonoid ANR medium borderline
ORGLA07G0164200.1 Flavonoid ANR medium borderline
ORGLA07G0164300.1 Flavonoid ANR medium pass
ORGLA08G0075300.1 Flavonoid ANR medium borderline
ORGLA08G0141400.1 Flavonoid ANR medium borderline
ORGLA09G0076800.1 Flavonoid ANR medium borderline
ORGLA09G0180600.1 Flavonoid ANR medium borderline
ORGLA09G0180800.1 Flavonoid ANR high pass
ORGLA09G0181400.1 Flavonoid ANR medium borderline
ORGLA09G0181500.1 Flavonoid ANR low borderline
ORGLA09G0181600.1 Flavonoid ANR medium borderline
ORGLA10G0147500.1 Flavonoid ANR low borderline
ORGLA11G0081500.1 Flavonoid ANR low borderline
ORGLA12G0177900.1 Flavonoid ANR high pass
ORGLA12G0178700.1 Flavonoid ANR medium borderline
ORGLA02G0216400.1 Flavonoid ANS/LDOX medium borderline
ORGLA05G0046700.1 Flavonoid ANS/LDOX medium borderline
ORGLA06G0046000.1 Flavonoid ANS/LDOX medium borderline
ORGLA10G0044100.1 Flavonoid ANS/LDOX low borderline
ORGLA01G0291500.1 Flavonoid C4H medium pass
ORGLA02G0140700.1 Flavonoid C4H low borderline
ORGLA02G0140800.1 Flavonoid C4H low borderline
ORGLA04G0018200.1 Flavonoid C4H low borderline
ORGLA04G0273100.1 Flavonoid C4H low borderline
ORGLA05G0099000.1 Flavonoid C4H medium borderline
ORGLA06G0147900.1 Flavonoid C4H low borderline
ORGLA06G0157300.1 Flavonoid C4H medium borderline
ORGLA07G0189200.1 Flavonoid C4H medium borderline
ORGLA08G0104600.1 Flavonoid C4H low borderline
ORGLA08G0175200.1 Flavonoid C4H low borderline
ORGLA03G0357600.1 Flavonoid CHI low borderline
ORGLA11G0201200.1 Flavonoid CHI medium pass
ORGLA12G0006500.1 Flavonoid CHI medium pass
ORGLA01G0173900.1 Flavonoid CHS medium pass
ORGLA04G0001800.1 Flavonoid CHS medium pass
ORGLA05G0062100.1 Flavonoid CHS medium pass
ORGLA05G0062200.1 Flavonoid CHS medium pass