PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA11G0222700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0008800.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA12G0019300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0028900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0076100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0110200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0119600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0200600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA12G0201000.1 Steroid DWF4/CYP90B1 medium pass
ORGLA02G0140000.1 Steroid DWF5 medium borderline
ORGLA01G0019100.1 Steroid DWF7 medium pass
ORGLA01G0123100.1 Steroid FK high pass
ORGLA09G0161400.1 Steroid FK high pass
ORGLA01G0002100.1 Steroid HYD1 high pass
ORGLA03G0118300.1 Steroid HYD1 low borderline
ORGLA01G0058700.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA02G0238500.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA03G0369400.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA04G0191800.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA04G0191900.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA07G0135500.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA08G0200200.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA12G0193800.1 Steroid ROT3/CYP90C1 medium borderline
ORGLA03G0004600.1 Steroid SMO1/SMO2 medium pass
ORGLA07G0001300.1 Steroid SMO1/SMO2 medium pass
ORGLA10G0125100.1 Steroid SMO1/SMO2 medium pass
ORGLA01G0033800.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA01G0063100.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA01G0117100.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA01G0117200.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA01G0190500.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA01G0266300.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA01G0301100.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA02G0009500.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA02G0138800.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA02G0243900.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA02G0309700.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA02G0342900.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA03G0026400.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA03G0064800.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA03G0084700.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA03G0185600.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA03G0188300.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA03G0189300.1 Steroid SMT1/SMT2/SMT3 low borderline
ORGLA03G0299000.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA03G0348700.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA04G0019800.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA04G0057600.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA04G0079600.1 Steroid SMT1/SMT2/SMT3 medium pass
ORGLA04G0163500.1 Steroid SMT1/SMT2/SMT3 low borderline