PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA09G0089000.1 Terpenoid CYP76 medium borderline
ORGLA09G0089100.1 Terpenoid CYP76 medium borderline
ORGLA09G0089200.1 Terpenoid CYP76 medium borderline
ORGLA09G0091600.1 Terpenoid CYP76 medium borderline
ORGLA09G0134300.1 Terpenoid CYP76 medium pass
ORGLA09G0135600.1 Terpenoid CYP76 medium borderline
ORGLA09G0168100.1 Terpenoid CYP76 medium borderline
ORGLA09G0170600.1 Terpenoid CYP76 medium pass
ORGLA10G0016800.1 Terpenoid CYP76 medium pass
ORGLA10G0018600.1 Terpenoid CYP76 medium pass
ORGLA10G0027400.1 Terpenoid CYP76 medium pass
ORGLA10G0027600.1 Terpenoid CYP76 medium borderline
ORGLA10G0027800.1 Terpenoid CYP76 medium borderline
ORGLA10G0028200.1 Terpenoid CYP76 medium borderline
ORGLA10G0030800.1 Terpenoid CYP76 medium borderline
ORGLA10G0030900.1 Terpenoid CYP76 medium borderline
ORGLA10G0031000.1 Terpenoid CYP76 medium pass
ORGLA10G0040100.1 Terpenoid CYP76 medium pass
ORGLA10G0045600.1 Terpenoid CYP76 medium borderline
ORGLA10G0046200.1 Terpenoid CYP76 medium borderline
ORGLA10G0057800.1 Terpenoid CYP76 medium pass
ORGLA10G0068200.1 Terpenoid CYP76 medium pass
ORGLA10G0079000.1 Terpenoid CYP76 medium pass
ORGLA10G0161500.1 Terpenoid CYP76 medium borderline
ORGLA11G0087900.1 Terpenoid CYP76 low borderline
ORGLA11G0111200.1 Terpenoid CYP76 medium borderline
ORGLA11G0117100.1 Terpenoid CYP76 medium pass
ORGLA11G0129900.1 Terpenoid CYP76 low borderline
ORGLA11G0211200.1 Terpenoid CYP76 medium pass
ORGLA12G0054500.1 Terpenoid CYP76 medium pass
ORGLA12G0076100.1 Terpenoid CYP76 medium borderline
ORGLA12G0193800.1 Terpenoid CYP76 low borderline
ORGLA12G0200600.1 Terpenoid CYP76 medium pass
ORGLA12G0201000.1 Terpenoid CYP76 medium pass
ORGLA01G0004200.1 Terpenoid DXR high pass
ORGLA07G0231200.1 Terpenoid DXR high pass
ORGLA06G0027700.1 Terpenoid DXS medium pass
ORGLA07G0049000.1 Terpenoid DXS medium pass
ORGLA01G0226700.1 Terpenoid FPPS medium pass
ORGLA01G0230300.1 Terpenoid FPPS medium pass
ORGLA01G0316200.1 Terpenoid FPPS medium pass
ORGLA02G0329200.1 Terpenoid FPPS low borderline
ORGLA04G0242900.1 Terpenoid FPPS medium pass
ORGLA04G0243000.1 Terpenoid FPPS medium pass
ORGLA05G0070700.1 Terpenoid FPPS medium borderline
ORGLA05G0210300.1 Terpenoid FPPS medium pass
ORGLA06G0041900.1 Terpenoid FPPS medium pass
ORGLA07G0166500.1 Terpenoid FPPS medium pass
ORGLA01G0084700.1 Terpenoid GGPPS medium borderline
ORGLA02G0234700.1 Terpenoid GGPPS medium borderline