PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA05G0236200.1 Terpenoid GGPPS medium borderline
ORGLA07G0257100.1 Terpenoid GGPPS medium borderline
ORGLA08G0046800.1 Terpenoid GGPPS medium borderline
ORGLA03G0299700.1 Terpenoid HDR/IspH high pass
ORGLA03G0299800.1 Terpenoid HDR/IspH high pass
ORGLA02G0200300.1 Terpenoid HDS/IspG high pass
ORGLA02G0255700.1 Terpenoid HMGR medium pass
ORGLA08G0179100.1 Terpenoid HMGR medium pass
ORGLA09G0114900.1 Terpenoid HMGR low borderline
ORGLA11G0094900.1 Terpenoid HMGR low borderline
ORGLA12G0178900.1 Terpenoid HMGR medium pass
ORGLA03G0012500.1 Terpenoid HMGS high pass
ORGLA08G0220500.1 Terpenoid HMGS high pass
ORGLA09G0132600.1 Terpenoid HMGS high pass
ORGLA05G0142000.1 Terpenoid IDI medium pass
ORGLA07G0142800.1 Terpenoid IDI medium pass
ORGLA01G0337200.1 Terpenoid MCT/IspD high pass
ORGLA04G0221900.1 Terpenoid MCT/IspD low borderline
ORGLA08G0054100.1 Terpenoid MCT/IspD low borderline
ORGLA11G0153700.1 Terpenoid MCT/IspD low borderline
ORGLA01G0391800.1 Terpenoid MDS/IspF low borderline
ORGLA02G0240000.1 Terpenoid MDS/IspF high pass
ORGLA02G0005500.1 Terpenoid MVD medium pass
ORGLA02G0006700.1 Terpenoid MVD medium pass
ORGLA02G0126100.1 Terpenoid MVD low borderline
ORGLA07G0172100.1 Terpenoid MVD low borderline
ORGLA08G0235900.1 Terpenoid MVD low borderline
ORGLA02G0336500.1 Terpenoid MVK low borderline
ORGLA03G0009600.1 Terpenoid MVK low borderline
ORGLA03G0367300.1 Terpenoid MVK low borderline
ORGLA08G0037400.1 Terpenoid MVK medium pass
ORGLA10G0049500.1 Terpenoid MVK medium pass
ORGLA03G0104400.1 Terpenoid PMK medium pass
ORGLA01G0117800.1 Terpenoid TPS medium pass
ORGLA02G0015300.1 Terpenoid TPS medium pass
ORGLA02G0136100.1 Terpenoid TPS medium pass
ORGLA02G0183000.1 Terpenoid TPS medium pass
ORGLA02G0183400.1 Terpenoid TPS medium pass
ORGLA02G0183500.1 Terpenoid TPS medium pass
ORGLA02G0183700.1 Terpenoid TPS medium pass
ORGLA02G0184000.1 Terpenoid TPS medium pass
ORGLA03G0164700.1 Terpenoid TPS medium pass
ORGLA03G0164800.1 Terpenoid TPS medium pass
ORGLA03G0171700.1 Terpenoid TPS medium pass
ORGLA03G0171800.1 Terpenoid TPS medium pass
ORGLA03G0172000.1 Terpenoid TPS medium pass
ORGLA03G0172100.1 Terpenoid TPS medium pass
ORGLA03G0172200.1 Terpenoid TPS medium pass
ORGLA03G0206300.1 Terpenoid TPS medium pass
ORGLA04G0004300.1 Terpenoid TPS medium pass