PlantSME Plant secondary metabolism enzyme database

Oryza granulata (oryza_granulata)

Imported from atlas release summary for Oryza granulata.

1789
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.53% Alkaloid pathway 22.25% Phenylpropanoid pathway 17.22% Flavonoid pathway 14.2% Steroid pathway 8.38% Rosmarinic acid pathway 6.43%
Family Distribution
BAHD 8.25% C4H 5.71% UGT 4.8% C3'H/CYP98A 4.36% 7DLGT 4.28% UFGT 4.19% 4CL 4.06% POD 3.94%
Other Families 60.4%
More Families (97)
IFS 138 3.4% CYP76 99 2.44% NMT 97 2.39% T3O 90 2.22% SMT1/SMT2/SMT3 89 2.19% F3H 87 2.14% DWF4/CYP90B1 81 1.99% STR 74 1.82% CAS 66 1.63% PYKS 57 1.4% SGD 55 1.35% F3'H/CYP75B 55 1.35% H6H 50 1.23% TPS 49 1.21% CAD 48 1.18% G8O/G8H 43 1.06% GES 43 1.06% TRI/TRII 42 1.03% BR6OX2/CYP85A2 42 1.03% SLS 40 0.98% CODM/T6ODM 39 0.96% PMT 37 0.91% ANR 37 0.91% CCR 37 0.91% CYP71 37 0.91% COR 35 0.86% HCT 35 0.86% CPD/CYP90A1 35 0.86% CYP90D1 35 0.86% LAC 34 0.84% 8HGO 33 0.81% IFR 33 0.81% CHS 33 0.81% RAS 33 0.81% T16H 31 0.76% PAL 27 0.66% CSE 26 0.64% GS 25 0.62% FNS 25 0.62% COMT 25 0.62% NCS 24 0.59% SQS/FDFT1 22 0.54% BBE 18 0.44% 7DLH 18 0.44% 16OMT 17 0.42% TAT 17 0.42% BR6OX1/CYP85A1 17 0.42% IO 16 0.39% F3'5'H/CYP75A 16 0.39% DFR 16 0.39% CYP51G1 16 0.39% XMT_MXMT_DXMT 15 0.37% TYDC_DDC 13 0.32% CCoAOMT 13 0.32% FPPS 13 0.32% CYP719 12 0.3% F5H/CYP84A 12 0.3% CPR 12 0.3% AACT 12 0.3% CNMT 10 0.25% ANS/LDOX 10 0.25% HPPR 10 0.25% 6OMT_4OMT_SOMT 9 0.22% CYP80B1 8 0.2% MPO 8 0.2% ROT3/CYP90C1 8 0.2% GGPPS 8 0.2% LAMT 7 0.17% MVK 6 0.15% DXS 5 0.12% ISY 4 0.1% FLS 4 0.1% SMO1/SMO2 4 0.1% HYD1 4 0.1% MCT/IspD 4 0.1% HMGS 4 0.1% IDI 4 0.1% ODC 3 0.07% CHI 3 0.07% FK 3 0.07% SQE 3 0.07% DET2 3 0.07% MVD 3 0.07% HMGR 3 0.07% CMK/IspE 3 0.07% DWF1 2 0.05% CPI1 2 0.05% PMK 2 0.05% MDS/IspF 2 0.05% ADC 1 0.02% CYP80F1 1 0.02% TDC 1 0.02% DWF5 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 564 19 BAHD (242) View species results
Alkaloid pathway 398 22 7DLGT (69) View species results
Phenylpropanoid pathway 308 13 POD (144) View species results
Flavonoid pathway 254 12 UFGT (158) View species results
Steroid pathway 150 12 SMT1/SMT2/SMT3 (58) View species results
Rosmarinic acid pathway 115 7 C4H (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1259 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 403 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F5H/CYP84A
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Gene Pathway Family Confidence Status Best Target
KAF0893740.1 Phenylpropanoid F5H/CYP84A medium pass F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0896127.1 Phenylpropanoid F5H/CYP84A low borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0896349.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0897568.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0909279.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0915234.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0916794.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0917328.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0921755.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0922719.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0922720.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
KAF0933901.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH