PlantSME Plant secondary metabolism enzyme database

Oryza granulata (oryza_granulata)

Imported from atlas release summary for Oryza granulata.

1789
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 564 19 BAHD (242) View species results
Alkaloid pathway 398 22 7DLGT (69) View species results
Phenylpropanoid pathway 308 13 POD (144) View species results
Flavonoid pathway 254 12 UFGT (158) View species results
Steroid pathway 150 12 SMT1/SMT2/SMT3 (58) View species results
Rosmarinic acid pathway 115 7 C4H (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1259 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 403 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
KAF0889148.1 Alkaloid PYKS high pass
KAF0890005.1 Alkaloid PYKS high pass
KAF0890773.1 Alkaloid PYKS low borderline
KAF0890774.1 Alkaloid PYKS low borderline
KAF0890775.1 Alkaloid PYKS low borderline
KAF0891307.1 Alkaloid PYKS low borderline
KAF0894353.1 Alkaloid PYKS high pass
KAF0896317.1 Alkaloid PYKS high pass
KAF0896902.1 Alkaloid PYKS low borderline
KAF0897054.1 Alkaloid PYKS high pass
KAF0897549.1 Alkaloid PYKS medium pass
KAF0897551.1 Alkaloid PYKS high pass
KAF0897552.1 Alkaloid PYKS high pass
KAF0897556.1 Alkaloid PYKS medium pass
KAF0897557.1 Alkaloid PYKS high pass
KAF0898548.1 Alkaloid PYKS low borderline
KAF0898549.1 Alkaloid PYKS high pass
KAF0898747.1 Alkaloid PYKS high pass
KAF0900617.1 Alkaloid PYKS low borderline
KAF0902482.1 Alkaloid PYKS low borderline
KAF0902484.1 Alkaloid PYKS low borderline
KAF0903219.1 Alkaloid PYKS high pass
KAF0903220.1 Alkaloid PYKS high pass
KAF0903473.1 Alkaloid PYKS low borderline
KAF0904388.1 Alkaloid PYKS low borderline
KAF0904837.1 Alkaloid PYKS low borderline
KAF0904840.1 Alkaloid PYKS low borderline
KAF0905295.1 Alkaloid PYKS high pass
KAF0905299.1 Alkaloid PYKS high pass
KAF0905302.1 Alkaloid PYKS high pass
KAF0905303.1 Alkaloid PYKS medium pass
KAF0905304.1 Alkaloid PYKS medium pass
KAF0908208.1 Alkaloid PYKS high pass
KAF0908315.1 Alkaloid PYKS low borderline
KAF0911841.1 Alkaloid PYKS low borderline
KAF0911842.1 Alkaloid PYKS low borderline
KAF0912548.1 Alkaloid PYKS low borderline
KAF0912928.1 Alkaloid PYKS low borderline
KAF0913257.1 Alkaloid PYKS low borderline
KAF0913358.1 Alkaloid PYKS low borderline
KAF0917261.1 Alkaloid PYKS medium pass
KAF0919640.1 Alkaloid PYKS low borderline
KAF0926995.1 Alkaloid PYKS low borderline
KAF0926996.1 Alkaloid PYKS low borderline
KAF0927169.1 Alkaloid PYKS low borderline
KAF0929907.1 Alkaloid PYKS high pass
KAF0930239.1 Alkaloid PYKS medium pass
KAF0930410.1 Alkaloid PYKS low borderline
KAF0930871.1 Alkaloid PYKS high pass
KAF0930872.1 Alkaloid PYKS high pass