Oryza granulata (oryza_granulata)
Imported from atlas release summary for Oryza granulata.
1789
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1789
Candidate Genes
BAHD
8.25%
C4H
5.71%
UGT
4.8%
C3'H/CYP98A
4.36%
7DLGT
4.28%
UFGT
4.19%
4CL
4.06%
POD
3.94%
Other Families
60.4%
More Families (97)
IFS
138
3.4%
CYP76
99
2.44%
NMT
97
2.39%
T3O
90
2.22%
SMT1/SMT2/SMT3
89
2.19%
F3H
87
2.14%
DWF4/CYP90B1
81
1.99%
STR
74
1.82%
CAS
66
1.63%
PYKS
57
1.4%
SGD
55
1.35%
F3'H/CYP75B
55
1.35%
H6H
50
1.23%
TPS
49
1.21%
CAD
48
1.18%
G8O/G8H
43
1.06%
GES
43
1.06%
TRI/TRII
42
1.03%
BR6OX2/CYP85A2
42
1.03%
SLS
40
0.98%
CODM/T6ODM
39
0.96%
PMT
37
0.91%
ANR
37
0.91%
CCR
37
0.91%
CYP71
37
0.91%
COR
35
0.86%
HCT
35
0.86%
CPD/CYP90A1
35
0.86%
CYP90D1
35
0.86%
LAC
34
0.84%
8HGO
33
0.81%
IFR
33
0.81%
CHS
33
0.81%
RAS
33
0.81%
T16H
31
0.76%
PAL
27
0.66%
CSE
26
0.64%
GS
25
0.62%
FNS
25
0.62%
COMT
25
0.62%
NCS
24
0.59%
SQS/FDFT1
22
0.54%
BBE
18
0.44%
7DLH
18
0.44%
16OMT
17
0.42%
TAT
17
0.42%
BR6OX1/CYP85A1
17
0.42%
IO
16
0.39%
F3'5'H/CYP75A
16
0.39%
DFR
16
0.39%
CYP51G1
16
0.39%
XMT_MXMT_DXMT
15
0.37%
TYDC_DDC
13
0.32%
CCoAOMT
13
0.32%
FPPS
13
0.32%
CYP719
12
0.3%
F5H/CYP84A
12
0.3%
CPR
12
0.3%
AACT
12
0.3%
CNMT
10
0.25%
ANS/LDOX
10
0.25%
HPPR
10
0.25%
6OMT_4OMT_SOMT
9
0.22%
CYP80B1
8
0.2%
MPO
8
0.2%
ROT3/CYP90C1
8
0.2%
GGPPS
8
0.2%
LAMT
7
0.17%
MVK
6
0.15%
DXS
5
0.12%
ISY
4
0.1%
FLS
4
0.1%
SMO1/SMO2
4
0.1%
HYD1
4
0.1%
MCT/IspD
4
0.1%
HMGS
4
0.1%
IDI
4
0.1%
ODC
3
0.07%
CHI
3
0.07%
FK
3
0.07%
SQE
3
0.07%
DET2
3
0.07%
MVD
3
0.07%
HMGR
3
0.07%
CMK/IspE
3
0.07%
DWF1
2
0.05%
CPI1
2
0.05%
PMK
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.02%
CYP80F1
1
0.02%
TDC
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
HDR/IspH
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 564 | 19 | BAHD (242) | View species results |
| Alkaloid pathway | 398 | 22 | 7DLGT (69) | View species results |
| Phenylpropanoid pathway | 308 | 13 | POD (144) | View species results |
| Flavonoid pathway | 254 | 12 | UFGT (158) | View species results |
| Steroid pathway | 150 | 12 | SMT1/SMT2/SMT3 (58) | View species results |
| Rosmarinic acid pathway | 115 | 7 | C4H (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1259 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 403 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| KAF0910831.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| KAF0911729.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAF0911730.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAF0912949.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAF0912980.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| KAF0913241.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| KAF0913263.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| KAF0913264.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| KAF0913377.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| KAF0914038.1 | Alkaloid | NMT | medium | borderline | NMT__00012__sp_C3SBS8_TNMT_ESCCA |
| KAF0914290.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAF0914291.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAF0914292.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAF0914995.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| KAF0915436.1 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| KAF0916059.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAF0916787.1 | Alkaloid | NMT | low | borderline | NMT__00052__sp_Q9AVJ9_MXMT1_COFAR |
| KAF0916788.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| KAF0916795.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| KAF0917017.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAF0917820.1 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| KAF0919153.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| KAF0919540.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAF0923419.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| KAF0924203.1 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| KAF0924207.1 | Alkaloid | NMT | medium | borderline | NMT__00052__sp_Q9AVJ9_MXMT1_COFAR |
| KAF0925098.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| KAF0925494.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| KAF0926541.1 | Alkaloid | NMT | medium | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| KAF0930178.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| KAF0931559.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| KAF0931560.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| KAF0931561.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| KAF0931562.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| KAF0932185.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAF0932186.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAF0933606.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAF0933607.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAF0933811.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| KAF0934606.1 | Alkaloid | NMT | medium | borderline | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| KAF0934919.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| KAF0934999.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| KAF0935039.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| KAF0935419.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| KAF0935420.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| KAF0935503.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| KAF0936088.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |