Oryza granulata (oryza_granulata)
Imported from atlas release summary for Oryza granulata.
2184
Candidate Protein Records
1789
Pathway-Level Records
4061
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4061
Family-Level Calls
BAHD
8.25%
C4H
5.71%
UGT
4.8%
C3'H/CYP98A
4.36%
7DLGT
4.28%
UFGT
4.19%
4CL
4.06%
POD
3.94%
Other Families
60.4%
More Families (97)
IFS
138
3.4%
CYP76
99
2.44%
NMT
97
2.39%
T3O
90
2.22%
SMT1/SMT2/SMT3
89
2.19%
F3H
87
2.14%
DWF4/CYP90B1
81
1.99%
STR
74
1.82%
CAS
66
1.63%
PYKS
57
1.4%
SGD
55
1.35%
F3'H/CYP75B
55
1.35%
H6H
50
1.23%
TPS
49
1.21%
CAD
48
1.18%
G8O/G8H
43
1.06%
GES
43
1.06%
TRI/TRII
42
1.03%
BR6OX2/CYP85A2
42
1.03%
SLS
40
0.98%
CODM/T6ODM
39
0.96%
PMT
37
0.91%
ANR
37
0.91%
CCR
37
0.91%
CYP71
37
0.91%
COR
35
0.86%
HCT
35
0.86%
CPD/CYP90A1
35
0.86%
CYP90D1
35
0.86%
LAC
34
0.84%
8HGO
33
0.81%
IFR
33
0.81%
CHS
33
0.81%
RAS
33
0.81%
T16H
31
0.76%
PAL
27
0.66%
CSE
26
0.64%
GS
25
0.62%
FNS
25
0.62%
COMT
25
0.62%
NCS
24
0.59%
SQS/FDFT1
22
0.54%
BBE
18
0.44%
7DLH
18
0.44%
16OMT
17
0.42%
TAT
17
0.42%
BR6OX1/CYP85A1
17
0.42%
IO
16
0.39%
F3'5'H/CYP75A
16
0.39%
DFR
16
0.39%
CYP51G1
16
0.39%
XMT_MXMT_DXMT
15
0.37%
TYDC_DDC
13
0.32%
CCoAOMT
13
0.32%
FPPS
13
0.32%
CYP719
12
0.3%
F5H/CYP84A
12
0.3%
CPR
12
0.3%
AACT
12
0.3%
CNMT
10
0.25%
ANS/LDOX
10
0.25%
HPPR
10
0.25%
6OMT_4OMT_SOMT
9
0.22%
CYP80B1
8
0.2%
MPO
8
0.2%
ROT3/CYP90C1
8
0.2%
GGPPS
8
0.2%
LAMT
7
0.17%
MVK
6
0.15%
DXS
5
0.12%
ISY
4
0.1%
FLS
4
0.1%
SMO1/SMO2
4
0.1%
HYD1
4
0.1%
MCT/IspD
4
0.1%
HMGS
4
0.1%
IDI
4
0.1%
ODC
3
0.07%
CHI
3
0.07%
FK
3
0.07%
SQE
3
0.07%
DET2
3
0.07%
MVD
3
0.07%
HMGR
3
0.07%
CMK/IspE
3
0.07%
DWF1
2
0.05%
CPI1
2
0.05%
PMK
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.02%
CYP80F1
1
0.02%
TDC
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
HDR/IspH
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 564 | 19 | BAHD (242) | View species results |
| Alkaloid pathway | 398 | 22 | 7DLGT (69) | View species results |
| Phenylpropanoid pathway | 308 | 13 | POD (144) | View species results |
| Flavonoid pathway | 254 | 12 | UFGT (158) | View species results |
| Steroid pathway | 150 | 12 | SMT1/SMT2/SMT3 (58) | View species results |
| Rosmarinic acid pathway | 115 | 7 | C4H (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1259 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 403 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| KAF0889752.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0890145.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0893464.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0893956.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0893963.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0893964.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0895647.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0896881.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0897201.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0897578.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0897636.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0898283.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0898587.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0898589.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0898593.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0898792.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0898793.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0899428.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0899647.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0902115.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0902539.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0903149.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0903967.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0903968.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0904832.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0904833.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0904890.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0904920.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0905005.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0905202.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0905203.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0905322.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0905325.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0905326.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0908686.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0908687.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0908688.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0908689.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0908690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0908844.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0912212.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0913787.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0913788.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0914004.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0914146.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0914148.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0914618.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0914619.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0915173.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0915174.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |