Oryza granulata (oryza_granulata)
Imported from atlas release summary for Oryza granulata.
1789
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1789
Candidate Genes
BAHD
8.25%
C4H
5.71%
UGT
4.8%
C3'H/CYP98A
4.36%
7DLGT
4.28%
UFGT
4.19%
4CL
4.06%
POD
3.94%
Other Families
60.4%
More Families (97)
IFS
138
3.4%
CYP76
99
2.44%
NMT
97
2.39%
T3O
90
2.22%
SMT1/SMT2/SMT3
89
2.19%
F3H
87
2.14%
DWF4/CYP90B1
81
1.99%
STR
74
1.82%
CAS
66
1.63%
PYKS
57
1.4%
SGD
55
1.35%
F3'H/CYP75B
55
1.35%
H6H
50
1.23%
TPS
49
1.21%
CAD
48
1.18%
G8O/G8H
43
1.06%
GES
43
1.06%
TRI/TRII
42
1.03%
BR6OX2/CYP85A2
42
1.03%
SLS
40
0.98%
CODM/T6ODM
39
0.96%
PMT
37
0.91%
ANR
37
0.91%
CCR
37
0.91%
CYP71
37
0.91%
COR
35
0.86%
HCT
35
0.86%
CPD/CYP90A1
35
0.86%
CYP90D1
35
0.86%
LAC
34
0.84%
8HGO
33
0.81%
IFR
33
0.81%
CHS
33
0.81%
RAS
33
0.81%
T16H
31
0.76%
PAL
27
0.66%
CSE
26
0.64%
GS
25
0.62%
FNS
25
0.62%
COMT
25
0.62%
NCS
24
0.59%
SQS/FDFT1
22
0.54%
BBE
18
0.44%
7DLH
18
0.44%
16OMT
17
0.42%
TAT
17
0.42%
BR6OX1/CYP85A1
17
0.42%
IO
16
0.39%
F3'5'H/CYP75A
16
0.39%
DFR
16
0.39%
CYP51G1
16
0.39%
XMT_MXMT_DXMT
15
0.37%
TYDC_DDC
13
0.32%
CCoAOMT
13
0.32%
FPPS
13
0.32%
CYP719
12
0.3%
F5H/CYP84A
12
0.3%
CPR
12
0.3%
AACT
12
0.3%
CNMT
10
0.25%
ANS/LDOX
10
0.25%
HPPR
10
0.25%
6OMT_4OMT_SOMT
9
0.22%
CYP80B1
8
0.2%
MPO
8
0.2%
ROT3/CYP90C1
8
0.2%
GGPPS
8
0.2%
LAMT
7
0.17%
MVK
6
0.15%
DXS
5
0.12%
ISY
4
0.1%
FLS
4
0.1%
SMO1/SMO2
4
0.1%
HYD1
4
0.1%
MCT/IspD
4
0.1%
HMGS
4
0.1%
IDI
4
0.1%
ODC
3
0.07%
CHI
3
0.07%
FK
3
0.07%
SQE
3
0.07%
DET2
3
0.07%
MVD
3
0.07%
HMGR
3
0.07%
CMK/IspE
3
0.07%
DWF1
2
0.05%
CPI1
2
0.05%
PMK
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.02%
CYP80F1
1
0.02%
TDC
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
HDR/IspH
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 564 | 19 | BAHD (242) | View species results |
| Alkaloid pathway | 398 | 22 | 7DLGT (69) | View species results |
| Phenylpropanoid pathway | 308 | 13 | POD (144) | View species results |
| Flavonoid pathway | 254 | 12 | UFGT (158) | View species results |
| Steroid pathway | 150 | 12 | SMT1/SMT2/SMT3 (58) | View species results |
| Rosmarinic acid pathway | 115 | 7 | C4H (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1259 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 403 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| KAF0915175.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0915176.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0915579.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0915621.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0916128.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0916587.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0918371.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0920709.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0920710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0920711.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0920960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0922840.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0924044.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0924047.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0925608.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0927526.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0928560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KAF0930606.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0930746.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0935113.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0936150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0936151.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0936152.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KAF0936153.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |