PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

6488
Candidate Protein Records
5617
Pathway-Level Records
12778
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Pvir09NG0038820.1 Alkaloid T3O medium borderline
Pvir09NG0038930.1 Alkaloid T3O medium pass
Pvir09NG0038930.2 Alkaloid T3O medium pass
Pvir09NG0038930.3 Alkaloid T3O low borderline
Pvir09NG0038930.4 Alkaloid T3O medium pass
Pvir09NG0038950.1 Alkaloid T3O medium pass
Pvir09NG0038960.1 Alkaloid T3O medium pass
Pvir09NG0038960.2 Alkaloid T3O medium pass
Pvir09NG0038960.3 Alkaloid T3O medium pass
Pvir09NG0039310.1 Alkaloid T3O medium borderline
Pvir09NG0042490.1 Alkaloid T3O medium borderline
Pvir09NG0042500.1 Alkaloid T3O medium borderline
Pvir09NG0042510.1 Alkaloid T3O medium borderline
Pvir09NG0042510.2 Alkaloid T3O medium borderline
Pvir09NG0044800.1 Alkaloid T3O medium pass
Pvir09NG0049140.1 Alkaloid T3O medium pass
Pvir09NG0049170.1 Alkaloid T3O medium pass
Pvir09NG0049190.1 Alkaloid T3O low borderline
Pvir09NG0049190.2 Alkaloid T3O medium pass
Pvir09NG0050930.1 Alkaloid T3O medium borderline
Pvir09NG0052000.1 Alkaloid T3O medium pass
Pvir09NG0052000.2 Alkaloid T3O medium pass
Pvir09NG0057050.1 Alkaloid T3O low borderline
Pvir09NG0059620.3 Alkaloid T3O low borderline
Pvirscaffold_1990002330.1 Alkaloid T3O medium borderline
Pvir01KG0023030.1 Alkaloid TDC low borderline
Pvir01NG0022390.1 Alkaloid TDC low borderline
Pvir03NG0007180.1 Alkaloid TDC medium borderline
Pvir05NG0053410.1 Alkaloid TDC low borderline
Pvir06NG0004090.1 Alkaloid TDC medium borderline
Pvir06NG0004100.1 Alkaloid TDC medium borderline
Pvir06NG0004180.1 Alkaloid TDC medium borderline
Pvir08KG0021040.1 Alkaloid TDC medium borderline
Pvir01KG0021120.1 Alkaloid TRI/TRII medium pass
Pvir01KG0021120.2 Alkaloid TRI/TRII medium pass
Pvir01KG0030520.1 Alkaloid TRI/TRII low borderline
Pvir01KG0030540.1 Alkaloid TRI/TRII low borderline
Pvir01KG0030560.1 Alkaloid TRI/TRII low borderline
Pvir01KG0042470.1 Alkaloid TRI/TRII medium pass
Pvir01NG0009660.1 Alkaloid TRI/TRII medium pass
Pvir01NG0019970.1 Alkaloid TRI/TRII medium pass
Pvir01NG0023360.1 Alkaloid TRI/TRII medium pass
Pvir01NG0029830.1 Alkaloid TRI/TRII low borderline
Pvir01NG0029870.1 Alkaloid TRI/TRII low borderline
Pvir01NG0041130.1 Alkaloid TRI/TRII medium pass
Pvir02KG0002360.1 Alkaloid TRI/TRII medium pass
Pvir02KG0002390.1 Alkaloid TRI/TRII medium pass
Pvir02KG0005520.1 Alkaloid TRI/TRII medium pass
Pvir02KG0029350.1 Alkaloid TRI/TRII low borderline
Pvir02KG0029360.1 Alkaloid TRI/TRII medium borderline